Fixed input false param

BU-ISCIII · Apr 19, 2024 · fb7ad0d · fb7ad0d
1 parent ab02bbc
commit fb7ad0d
Showing 1 changed file with 9 additions and 5 deletions.
diff --git a/workflows/nanopore.nf b/workflows/nanopore.nf
@@ -191,11 +191,10 @@ workflow NANOPORE {
         //
         // SUBWORKFLOW: Read in samplesheet containing sample to barcode mappings
         //
-        if (ch_samplesheet.queue.size() == 0) {
-            ch_fastq_dirs
-                .map { barcode, dir, count -> [ barcode, barcode, dir, count ] }
-                .set { ch_fastq_dirs }
-        } else {
+        if (!params.input){
+            ch_samplesheet = null
+        }
+        if (ch_samplesheet) {
             ch_samplesheet
             .join(ch_fastq_dirs, remainder: true)
             .set { ch_fastq_dirs }
@@ -233,6 +232,11 @@ workflow NANOPORE {
                 .filter { (it[1] != null)  }
                 .filter { (it[-1] != null) }
                 .set { ch_fastq_dirs }
+
+        } else {
+            ch_fastq_dirs
+                .map { barcode, dir, count -> [ barcode, barcode, dir, count ] }
+                .set { ch_fastq_dirs }
         }
     } else if (single_barcode_dir) {
         Channel