Beta #10
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Beta #10
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-Add download as csv button -Add filter
-remove collapse panel 'advanced settings' -add parameter 'effect'/'strat' and 'subgroup' to the effect_calc() calculation
…tion -add warning text for all csv file inputs
-increase max upload size from 40 to 100MB app_ui.R: -Change version date mod_data_manual: -change text of maximal file size fct_effect_calc.R: -change if-conditions for subgroup and strata -add suppressWarnings for rma.mh functions mod_file_creation.R: -add checkboxInputs for subgroup and stratification variables and add reactiveValues subgroup_reac_val & stratificiation_reac_val for effect_calc function -change option multiple = FALSE for pickerInput "effect"
change choices to fit functtion effect_calc fct_effect_calc.R: update to recent version fct_effect_calc_test.R: update vectorized version
add downloadhandler functionality
-add parameter aval for analysis value mod_file_creation.R: -add selecitonInput "sel_aval" for analysis value -allow multiple selections in stratification selection
-add supressWarningsmessages mod_file_creation.R: -add isTruthy-function - set multiple = FALSE for stratification variable
Bug fix: check if selected population variable is numeric in data
-add "Check"-text for variable analysis set -add 'Click to open' text -remove "Required variables in ADTTE" text in start text -add ITT and FAS to analysis set character string for analysis set variable selection fct_effect_calc.R: - bug fix for numeric variable population
- update to most recent version mod_file_creation.R: - create new button panel - change choices in effect Input in File creation
change stratification pickerinput to multiple true
- fix bug strata variable mod_file_creation.R: -change choices of data_scope
-add day variable in file creation for methods "CID" and "EXCESS_CID" -add Intro text -remove text from image tag -remove server option fct_effect_calc.R: -add most recent version of the function app_ui: -remove text from image tag app_server: -change Intro text
-bug in effect == "HR" for multiple verum selections mod_file_creation.R: -add day_variable_check to observer for calculation button color
-increase upload size
app_server.R: bug fix: "Upload Data"
app_server.R: -fix sorting "As Input" in forestplot fct_effect_calc_new.R: -change text for EXCESS_CID and CID for 2-level events
bug fix: Change missings to "." instead of NA to avoid getting character values in read.csv
add new arrangement method to debug missing/incorrect subgroup selection
-Set missing subgroups to "N/A" in effect_calc_new - remove filter t_1 >0 & t_2>0 since this remove subgroups with 0 events in one of the treatement groups
undo changes from version 2.0.8
Addition of documentation in rd_func For CID create NAs in case of zero cell counts and missing patients in one treatment group
…ESS_CID & CID Adaption for this data situation still needed for HR
… EXCESS_CID & CID
Further clarification on methodology added to about BReasy and data manual tabs
app_server.R: (Only) If 'file creation'-tab is used, transform Estimates in percent for ARD, IRD and CID for Forest Plot display fct_effect_calc_new.R: -Change 100 patient years to patient years and correct calculations
app_server: -expand required variable list for "EXCESS_XX" and check if EFFECT_XX or EXCESSS_XX is available fct_breasy_forestplot.R: -add EXCESS_ as possible Estimate name fct_effect_calc_new.R: -rename variable from EFFECT_XX to EXCESS_XX when EXCESS method is selected in file_creation tab
Bug fix in effect_calc_new-function: Calculate effect * 10000 for excess number first and then use round(3)
fct_breasy_forestplot.R: -Change forest plot x-axis label
…evtools::check() remove old effect_calc-function
Allowing the calculation of estimates based on cumulative incidences in case of zero cell counts
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Update main based on beta branch including file creation