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fix order of mppx and mppy in Phillips parser #248

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fix order of mppx and mppy in Phillips parser

fix order of mppx and mppy in Phillips parser #248

Workflow file for this run

.github/workflows/run_pytests.yaml at d386395
name: tiffslide ci
on:
push:
branches:
- main
tags:
- v*.*.*
pull_request: {}
jobs:
# RUN PYTEST ON TIFFSLIDE SOURCE
tests:
name: pytest ${{ matrix.os }}::py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
max-parallel: 5
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: ["3.11"]
include:
# we'll test the python support on ubuntu
- os: ubuntu-latest
python-version: "3.10"
- os: ubuntu-latest
python-version: "3.9"
- os: ubuntu-latest
python-version: "3.8"
steps:
- name: Checkout TiffSlide
uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install TiffSlide
run: python -m pip install -e .[dev]
- name: Cache tiffslide/tests/data
uses: actions/cache@v3
with:
path: tiffslide/tests/data
key: downloaded-slides
- name: Run Tests
run: pytest --cov=./tiffslide tiffslide
# RUN MYPY STATIC TYPE ANALYSIS ON TIFFSLIDE SOURCE
typing:
name: mypy type analysis
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -e .[dev]
- name: Run mypy
run: |
mypy --install-types --non-interactive --python-version=3.8 tiffslide
# DEPLOY TIFFSLIDE TO TEST.PYPI ON SUCCESS
testdeploy:
needs: [tests, typing]
name: deploy to test.pypi
runs-on: ubuntu-latest
if: github.event_name == 'push' && github.ref == 'refs/heads/main'
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install wheel "setuptools_scm>=6.2" build
# we'll have to remove local_scheme for pushes to test.pypi pep440
- name: Get version without local_scheme
id: non_local_version
run: |
python -m setuptools_scm | awk -F+ '{print "::set-output name=version::"$1}'
- name: Build a binary wheel and a source tarball
env:
SETUPTOOLS_SCM_PRETEND_VERSION: ${{ steps.non_local_version.outputs.version }}
run: |
python -m build .
# push all versions on master to test.pypi.org
- name: Publish package to TestPyPI
continue-on-error: true
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.test_pypi_password }}
repository_url: https://test.pypi.org/legacy/
# DEPLOY TIFFSLIDE TO PYPI ON SUCCESS
deploy:
needs: [tests, typing]
name: deploy to pypi
runs-on: ubuntu-latest
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.8
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install build
- name: Build a binary wheel and a source tarball
run: |
python -m build .
# push all tagged versions to pypi.org
- name: Publish package to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.pypi_password }}