-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merge pyscf upstream #3
base: master
Are you sure you want to change the base?
Commits on Mar 14, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 64c0c08 - Browse repository at this point
Copy the full SHA 64c0c08View commit details -
Fix _finalize method of UHF class (issue pyscf#1574) (pyscf#1621)
* Fix issue pyscf#1574 * typo
Configuration menu - View commit details
-
Copy full SHA for ea14db5 - Browse repository at this point
Copy the full SHA ea14db5View commit details
Commits on Mar 15, 2023
-
* Fix dimension error for 3c2e integrals * Update conda build jobs * Release 2.2.0
Configuration menu - View commit details
-
Copy full SHA for c18b6d5 - Browse repository at this point
Copy the full SHA c18b6d5View commit details -
Density fitting gradients and hessian for RSH functionals (pyscf#1630)
* Fix gradients and hessian for density fitting DFT with RSH functionals * Add range_coulomb context for pbc.df modules
Configuration menu - View commit details
-
Copy full SHA for 47d1fe4 - Browse repository at this point
Copy the full SHA 47d1fe4View commit details -
Configuration menu - View commit details
-
Copy full SHA for 6a37eb7 - Browse repository at this point
Copy the full SHA 6a37eb7View commit details -
Configuration menu - View commit details
-
Copy full SHA for fc82a94 - Browse repository at this point
Copy the full SHA fc82a94View commit details -
Fix flake8 config file for flake8>6
* Backslashes are not recognized and flake8 will fail under new versions
Configuration menu - View commit details
-
Copy full SHA for ebcf269 - Browse repository at this point
Copy the full SHA ebcf269View commit details -
PBC DF K-build with a smaller overhead (pyscf#1550)
* Add mo-based K-build * fix mdf bug & 0D bug * support mo-tagged dm --------- Co-authored-by: hongzhouye <>
Configuration menu - View commit details
-
Copy full SHA for ae488d3 - Browse repository at this point
Copy the full SHA ae488d3View commit details -
Configuration menu - View commit details
-
Copy full SHA for 5bd220e - Browse repository at this point
Copy the full SHA 5bd220eView commit details
Commits on Mar 16, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 6707f29 - Browse repository at this point
Copy the full SHA 6707f29View commit details -
pbc.df.CDERIArray compatibility improved (pyscf#1628)
* Backward compatibility for class CDERIArray (fix issue pyscf#1451) * Fix CDERIArray for reading old data format * Check dimension
Configuration menu - View commit details
-
Copy full SHA for c1a792d - Browse repository at this point
Copy the full SHA c1a792dView commit details -
Read cubefile xs, ys, zs correctly (pyscf#1532)
* Read cubefile xs, ys, zs correctly * Read cubefile nx and use that to calculate xs (y and z as well) * Fix issue pyscf#1531 * Read cubefile xs, ys, zs correctly * Read cubefile nx and use that to calculate xs (y and z as well) * Fix issue pyscf#1531 * Add import Cell * import Cell in read function * swap order of nx and xs * add reading of box information * read function now reads box from cubefile * remove trailing whitespaces * Add tests * Solve conflicts * Update cubegen tests --------- Co-authored-by: Till Hanke <[email protected]> Co-authored-by: Qiming Sun <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for 82c8585 - Browse repository at this point
Copy the full SHA 82c8585View commit details -
ao2mo from scalar integral to complex GHF orbitals (pyscf#1411)
* implements ao2mo from scalar ao integrals to complex ghf orbital or spinors * Add tests and bugfixes --------- Co-authored-by: Qiming Sun <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for f39287a - Browse repository at this point
Copy the full SHA f39287aView commit details -
Configuration menu - View commit details
-
Copy full SHA for 9ab2153 - Browse repository at this point
Copy the full SHA 9ab2153View commit details -
DIIS instability due to numerical noises (fix issue pyscf#1524) (pysc…
…f#1638) Improves DIIS numerical stability (issue pyscf#1524)
Configuration menu - View commit details
-
Copy full SHA for 15920e6 - Browse repository at this point
Copy the full SHA 15920e6View commit details
Commits on Mar 17, 2023
-
Adds UCISD with density-fitting (pyscf#1450)
* Adds support for UCISD with density fitting * Allows RCISD with df in ci.__init__ * Remove trailing whitespaces * Removes unnecessary import
Configuration menu - View commit details
-
Copy full SHA for 737ed93 - Browse repository at this point
Copy the full SHA 737ed93View commit details -
Pretty printing in mcscf module (pyscf#1475)
* MAINT: Format gradient norm in printout * MAINT: Modify format strings for pretty print number alingment * MAINT: Pretty printing for the mcscf module * MAINT: Eliminate spaces in AO labels
Configuration menu - View commit details
-
Copy full SHA for 5368de5 - Browse repository at this point
Copy the full SHA 5368de5View commit details
Commits on Mar 20, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 7aebc2c - Browse repository at this point
Copy the full SHA 7aebc2cView commit details -
Configuration menu - View commit details
-
Copy full SHA for 9ef8040 - Browse repository at this point
Copy the full SHA 9ef8040View commit details -
Configuration menu - View commit details
-
Copy full SHA for a1813e7 - Browse repository at this point
Copy the full SHA a1813e7View commit details -
Configuration menu - View commit details
-
Copy full SHA for b195ad7 - Browse repository at this point
Copy the full SHA b195ad7View commit details -
Fixes hybrid functional checks (pyscf#1646)
* libxc.parse_xc memoization * Fix overwritten for lru cached results * Fix df-hessian for wb97 functional * Improves hybrid functional checks * undefined variable
Configuration menu - View commit details
-
Copy full SHA for 9e0b87b - Browse repository at this point
Copy the full SHA 9e0b87bView commit details -
Updates github actions for release pipeline (pyscf#1639)
* Updates github action configs * Update conda release scripts * Fix conda build recipe and release pipeline * Update conda recipe * Missing conda build config file
Configuration menu - View commit details
-
Copy full SHA for 95b15d9 - Browse repository at this point
Copy the full SHA 95b15d9View commit details -
lo/boys: Use same centers for r2 and r integrals, fix charge center e…
…valuation (pyscf#1635) * lo/boys: Use same centers for r2 and r integrals, fix charge center evaluation * Update localized orbitals tests * lo/boys: Remove factor 2 from <r>^2 in cost_function --------- Co-authored-by: Qiming Sun <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for 4350e9b - Browse repository at this point
Copy the full SHA 4350e9bView commit details -
Moment resolved GF-CCSD (pyscf#1448)
* Initial implementation of GF-CCSD * Bug fixes * Fix contractions, late contraction for ket * Nuke old functions * Clean comments, appease flake8 * Adds GFCCSD to __init__.py * Change to amplitude passing * Fix to sign, niter argument and some logging * Adds tests for GFCCSD * Adds tests for density fitting * Adds simple GF-CCSD example * Adds more examples * Update examples and refs * Small comment in example 52 * Renames ipccsd and eaccsd to ipgfccsd and eagfccsd * Moment input example now uses HF and AGF2 moments * Adds example of transformation to self-energy * Small changes to examples * Adds explicit ket routines * Fix function name * Changes name of solver to MomGFCCSD * Fix class name in some docstrings --------- Co-authored-by: George Booth <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for 58ee3f5 - Browse repository at this point
Copy the full SHA 58ee3f5View commit details
Commits on Mar 21, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 1258957 - Browse repository at this point
Copy the full SHA 1258957View commit details -
Configuration menu - View commit details
-
Copy full SHA for 2129cc7 - Browse repository at this point
Copy the full SHA 2129cc7View commit details -
Configuration menu - View commit details
-
Copy full SHA for ade9d02 - Browse repository at this point
Copy the full SHA ade9d02View commit details -
Configuration menu - View commit details
-
Copy full SHA for e5f0555 - Browse repository at this point
Copy the full SHA e5f0555View commit details -
Configuration menu - View commit details
-
Copy full SHA for 561aa36 - Browse repository at this point
Copy the full SHA 561aa36View commit details -
Configuration menu - View commit details
-
Copy full SHA for 0ab65fb - Browse repository at this point
Copy the full SHA 0ab65fbView commit details -
Configuration menu - View commit details
-
Copy full SHA for 812d650 - Browse repository at this point
Copy the full SHA 812d650View commit details -
Configuration menu - View commit details
-
Copy full SHA for 4bdd3c0 - Browse repository at this point
Copy the full SHA 4bdd3c0View commit details -
Configuration menu - View commit details
-
Copy full SHA for 0819e99 - Browse repository at this point
Copy the full SHA 0819e99View commit details -
Configuration menu - View commit details
-
Copy full SHA for 8e2e5f6 - Browse repository at this point
Copy the full SHA 8e2e5f6View commit details -
Configuration menu - View commit details
-
Copy full SHA for 7b9df12 - Browse repository at this point
Copy the full SHA 7b9df12View commit details
Commits on Mar 22, 2023
-
Fix multigrid vxc shape bug (pyscf#1647)
* Fix multigrid vxc shape bug (pyscf#1356) * fix multigrid vxc shape --------- Co-authored-by: Xing Zhang <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for ec8618c - Browse repository at this point
Copy the full SHA ec8618cView commit details
Commits on Mar 23, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 98f232f - Browse repository at this point
Copy the full SHA 98f232fView commit details -
Check the number of roots during davidson diagonalization (pyscf#1654)
* Check the number of roots during davidson diagonalization (fix issue pyscf#1447) * Fix initial value of e in davidson1 * Fix davidson solver * Fix davidson solver for diagonal matrix (issue pyscf#1362) * Update cisd default level_shift * Update tests for linalg_helper.py
Configuration menu - View commit details
-
Copy full SHA for af54fd7 - Browse repository at this point
Copy the full SHA af54fd7View commit details -
Configuration menu - View commit details
-
Copy full SHA for 60193b4 - Browse repository at this point
Copy the full SHA 60193b4View commit details -
GDF custom cderi file for rsh functional (pyscf#1664)
* More checks for groupname * Fix cderi dataset name conflicts (issue pyscf#768) * Add tests
Configuration menu - View commit details
-
Copy full SHA for 0fd3b93 - Browse repository at this point
Copy the full SHA 0fd3b93View commit details -
Clean up PBC TDDFT (pyscf#1658)
* clean up pbc TDDFT classes (fix issue pyscf#1315) * Allow nto analysis in pbc tddft * Update example
Configuration menu - View commit details
-
Copy full SHA for 4a4b9e2 - Browse repository at this point
Copy the full SHA 4a4b9e2View commit details
Commits on Mar 27, 2023
-
Cleanup logging messages for SACASSCF module (pyscf#1672)
* Cleanup logging messages for SACASSCF module * Update tests
Configuration menu - View commit details
-
Copy full SHA for dd179a8 - Browse repository at this point
Copy the full SHA dd179a8View commit details
Commits on Mar 28, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 2c7d42d - Browse repository at this point
Copy the full SHA 2c7d42dView commit details -
Frequency integration grid scaling factor as input to RPA calculations (
pyscf#1670) * scaling factor of frequency integration grid as input parameter in RPA calculations * default values for nw and x0 in kernel
Configuration menu - View commit details
-
Copy full SHA for 5cc2d9e - Browse repository at this point
Copy the full SHA 5cc2d9eView commit details -
Configuration menu - View commit details
-
Copy full SHA for c876e96 - Browse repository at this point
Copy the full SHA c876e96View commit details
Commits on Mar 29, 2023
-
Add low-level interface to Basis Set Exchange (pyscf#1166)
* Add low-level interface to Basis Set Exchange * Include examples on how to print out version data and basis set references * Use basis-set-exchange as the last option for basis parser * Fix df.make_auxbasis * Fix lint error --------- Co-authored-by: Qiming Sun <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for 430a9db - Browse repository at this point
Copy the full SHA 430a9dbView commit details
Commits on Mar 30, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 3e9eeda - Browse repository at this point
Copy the full SHA 3e9eedaView commit details -
Configuration menu - View commit details
-
Copy full SHA for df92512 - Browse repository at this point
Copy the full SHA df92512View commit details
Commits on Apr 1, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 6abf32e - Browse repository at this point
Copy the full SHA 6abf32eView commit details -
Configuration menu - View commit details
-
Copy full SHA for e2a8572 - Browse repository at this point
Copy the full SHA e2a8572View commit details
Commits on Apr 3, 2023
-
Add examples and other cleanups (pyscf#1693)
* Example of custom pbc-gdf and other cleanups * Update example dft/24-define_xc_functional: add fxc functional
Configuration menu - View commit details
-
Copy full SHA for 9ae825a - Browse repository at this point
Copy the full SHA 9ae825aView commit details
Commits on Apr 11, 2023
-
Refactor NLC parser and integral code (pyscf#1681)
* Update nlc parser for molecular dft * Refactor nlc for gradients * Fix bug in nlc_coeff parser and change nlc_coeff API * check NLC in PBC DFT
Configuration menu - View commit details
-
Copy full SHA for eb7d904 - Browse repository at this point
Copy the full SHA eb7d904View commit details
Commits on Apr 14, 2023
-
Fix github action (pyscf#1702)
* codecov was removed from pypi * Re-enable codecov action
Configuration menu - View commit details
-
Copy full SHA for 2065b43 - Browse repository at this point
Copy the full SHA 2065b43View commit details -
Update geomeTRIC library interface (pyscf#1700)
* Update interface of geomeTRIC library to support initial hessian * Fix bug in MP2 gradients scanner
Configuration menu - View commit details
-
Copy full SHA for 30236b4 - Browse repository at this point
Copy the full SHA 30236b4View commit details
Commits on Apr 19, 2023
-
Configuration menu - View commit details
-
Copy full SHA for b1522f2 - Browse repository at this point
Copy the full SHA b1522f2View commit details -
GHF density fitting (pyscf#1708)
* Fix density-fitting GHF * Update tests
Configuration menu - View commit details
-
Copy full SHA for 6eb7542 - Browse repository at this point
Copy the full SHA 6eb7542View commit details
Commits on Apr 29, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 0b957fb - Browse repository at this point
Copy the full SHA 0b957fbView commit details -
Configuration menu - View commit details
-
Copy full SHA for 4706c95 - Browse repository at this point
Copy the full SHA 4706c95View commit details -
Configuration menu - View commit details
-
Copy full SHA for 519a967 - Browse repository at this point
Copy the full SHA 519a967View commit details
Commits on Apr 30, 2023
-
Refactors FCI cylindrical symmetry implementation (pyscf#1623)
* Optimize direct_spin1_symm and direct_spin1_cyl_sym * Optimize fcivec size for spin1_symm solvers * Update relevant mcscf modules * Add example for fci-cyl-sym solver * Optimize direct_spin1_cyl_sym * fix * Add tests for FCI-ep * Disable fix_spin for FCI of UHF orbitals * FCI initial guess may introduce problematic states * Add timer for fci (issue pyscf#1562) * Restore fci.direct_spin1 initial guess treatment
Configuration menu - View commit details
-
Copy full SHA for 7000be6 - Browse repository at this point
Copy the full SHA 7000be6View commit details
Commits on May 9, 2023
-
BUGFIX: SACASSCF grad fcasscf right track nelecas (pyscf#1721)
* SACASSCF grad fcasscf right nelecas one of the fcisolver refactors exposed that the fcasscf object wasn't keeping track of nelecas properly * Add some docstring because why not --------- Co-authored-by: Matthew R Hermes <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for a584f61 - Browse repository at this point
Copy the full SHA a584f61View commit details -
Pass atom_symbol in all calls to ecp.core_configuration (pyscf#1723)
* MAINT: Pass atom_symbol in all calls to ecp.core_configuration * BUG: Pass pure atom_symbol to ecp.core_configuration * MAINT: Adapt minao and atom initial guess to f-in-core ECPs * MAINT: Add newline for the atom initial guess to visually separate the actual calculation * MAINT: Add test for f-in-core ECP * Update test_ecp.py --------- Co-authored-by: Qiming Sun <[email protected]>
Configuration menu - View commit details
-
Copy full SHA for 063af4c - Browse repository at this point
Copy the full SHA 063af4cView commit details
Commits on May 22, 2023
-
Fix bug in xc parser for hybrid LDA functional (pyscf#1738)
* Handle HYB_LDA_XC in xc_parser * Cleanup dft.gen_grid
Configuration menu - View commit details
-
Copy full SHA for 92f57dc - Browse repository at this point
Copy the full SHA 92f57dcView commit details -
Configuration menu - View commit details
-
Copy full SHA for 8eea7e8 - Browse repository at this point
Copy the full SHA 8eea7e8View commit details
Commits on Jun 4, 2023
-
Configuration menu - View commit details
-
Copy full SHA for a00d29c - Browse repository at this point
Copy the full SHA a00d29cView commit details
Commits on Jun 6, 2023
-
Configuration menu - View commit details
-
Copy full SHA for 35bc7d8 - Browse repository at this point
Copy the full SHA 35bc7d8View commit details