update mouse gut reports

CAMI-challenge · Nov 2, 2020 · 92ba37b · 92ba37b
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diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/Bracken 2.5/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/Bracken_2.5/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/Bracken_2.5/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/Bracken_2.5/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/CAMIARKQuikr 1.0.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/CAMIARKQuikr_1.0.0/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/FOCUS 0.31/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/FOCUS_0.31/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/FOCUS_0.31/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/FOCUS_0.31/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPalette 1.0.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPalette_1.0.0/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/MetaPalette_1.0.0/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.2.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPhlAn2 2.9.21/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_strain.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_strain.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/MetaPhlAn_2.2.0/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_class.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_family.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_family.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_genus.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_genus.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_phylum.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_species.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_species.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_superkingdom.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/beta_diversity_bc_superkingdom.png
diff --git a/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/MetaPhlAn_2.9.21/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/MetaPhyler 1.25/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/MetaPhyler 1.25/beta_diversity_bc_class.png
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diff --git a/cami_ii_mg/by_tool/MetaPhyler_1.25/beta_diversity_bc_order.png b/cami_ii_mg/by_tool/MetaPhyler_1.25/beta_diversity_bc_order.png
diff --git a/cami_ii_mg/by_tool/MetaPhyler_1.25/beta_diversity_bc_phylum.png b/cami_ii_mg/by_tool/MetaPhyler_1.25/beta_diversity_bc_phylum.png
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diff --git a/cami_ii_mg/by_tool/MetaPhyler_1.25/purity_completeness_per_rank.png b/cami_ii_mg/by_tool/MetaPhyler_1.25/purity_completeness_per_rank.png
diff --git a/cami_ii_mg/by_tool/TIPP 2.0.0/beta_diversity_bc_class.png b/cami_ii_mg/by_tool/TIPP 2.0.0/beta_diversity_bc_class.png
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