Skip to content

Broad Data Collection Template

Leandro Hermida edited this page Mar 1, 2016 · 1 revision

##Columns from ctd2.dashboard.metaEnrich.txt

  • index_row = row index of the file
  • cell_line_subset = measurements from a subset of cell lines (by lineage) used in enrichment calculation
  • cell_line_exclusion = measurements from a subset of cell lines that were excluded from enrichment
  • feature_dataset = database from which genetic feature was obtained
  • compound_name = name of compound
  • enriched_feature = genetic feature that correlates to enrichment_direction
  • number_of_cell_lines = number of cell lines with genetic information for specific enrichment
  • number_of_mutant_cell_lines = number of cell lines with alterations in this Enriched_Feature
  • log_q_value_score = signed negative log (base 10) of false-discovery rate (FDR) q-value used to correct for multiple hypotheses
  • resp_image_path = file path for compound response heatmap image
  • feat_image_path = file path for genomic feature heatmap image
  • compound_structure_path = file path for compound structure image
  • NCI_portal = url to NCI portal location for source data
  • GCT_path = file path (in the near future, this will be a URL from the portal) for data in GCT format for visualization using other applications
Clone this wiki locally