Erik M Volz, Verity Hill, John T McCrone, Anna Price, David Jorgensen, Áine O'Toole, Joel Alexander Southgate, Robert Johnson, Ben Jackson, Fabricia F Nascimento, Sara M Rey, Samuel M Nicholls, Rachel M Colquhoun, Ana da Silva Filipe, James G Shepherd, David J Pascall, Rajiv Shah, Natasha Jesudason, Kathy Li, Ruth Jarrett, Nicole Pacchiarini, Matthew Bull, Lily Geidelberg, Igor Siveroni, COVID-19 Genomics UK Consortium, Ian G Goodfellow, Nicholas James Loman, Oliver Pybus, David L Robertson, Emma C Thomson, Andrew Rambaut, Thomas R Connor
This repository contains code and data files for the paper above. This paper is currently in peer review, and the preprint can be found here.
Genetic data in this paper was generated and analysed by the COG-UK consortium. All the data shown here is publically available here.
BEAST_analyses: Contains 2 XMLs for the exponential growth/decline BEAST analyses, one each for 614D sequences and 614G sequences