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11 Open 20 Closed
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Issues list

extra ID columns in output metadata
#95 opened Aug 8, 2020 by benjamincjackson
swap to jclusterfunk for phylotype and new uk lineage tip annotation
#93 opened Aug 6, 2020 by benjamincjackson
Is the list of sequencing centres for report generation up to date
#92 opened Aug 5, 2020 by benjamincjackson
Visualise insertions relative to the reference outputs
#84 opened Jul 14, 2020 by benjamincjackson
1
Switch to cutting out trees using gotree for the nextflow treetime utility script enhancement New feature or request
#82 opened Jul 9, 2020 by benjamincjackson
Sort metadata outputs by date (newest first) enhancement New feature or request
#77 opened Jul 4, 2020 by benjamincjackson
1
Break ties in bio_sample_ID deduplication by genome completeness enhancement New feature or request
#72 opened Jun 24, 2020 by benjamincjackson
Add documentation documentation Improvements or additions to documentation
#68 opened Jun 12, 2020 by benjamincjackson
1
4
Create a UK lineage typing tool enhancement New feature or request
#62 opened May 26, 2020 by rambaut
1
Investigate faster tree building approaches enhancement New feature or request
#41 opened May 18, 2020 by rambaut
Create down-sampled GISAID data set to use for CoG-UK background enhancement New feature or request
#40 opened May 18, 2020 by rambaut
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