Add note on usage to README, bump version

COMBAT-TB · Aug 6, 2023 · de5efc3 · de5efc3
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diff --git a/README.md b/README.md
@@ -75,6 +75,8 @@ optional arguments:
   --snv_only_filter     Mask out variants that are not SNVs
 ```
 
+*Note* that there are no filters by default. Each filter to be used needs to be explicitly mentioned.
+
 To export a region (from the list of possible region masks) in BED format, use the `tb_region_list_to_bed` command:
 
 

diff --git a/setup.cfg b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = tb_variant_filter
-version = 0.3.6
+version = 0.4.0
 author = "Peter van Heusden"
 author_email = [email protected]
 description = This tool offers multiple options for filtering variants (in VCF files, relative to M. tuberculosis H37Rv).