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Update diamond.md (#2169)
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* Update diamond.md

Database list updated

* Update diamond.md

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Co-authored-by: Rasmus Kronberg <[email protected]>
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kkmattil and rkronberg authored Jul 19, 2024
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Expand Up @@ -49,7 +49,7 @@ After that, you can check the Diamond help with the command:
diamond help
```

CSC provides Diamond indexes for Uniprot databases (swiss) and NCBI non-redundant database (nr). Location of these databases is defined with the environment variable `$DIAMONDDB`. For example, searching hits for a set of nucleotide sequences from the SwissProt database could be done with the command:
CSC provides Diamond indexes for SwissProt (swiss), Uniprot (uniprot) and NCBI non-redundant databases (nr). Location of these databases is defined with the environment variable `$DIAMONDDB`. For example, searching hits for a set of nucleotide sequences from the SwissProt database could be done with the command:

```bash
diamond blastx --query nuc.fasta -d $DIAMONDDB/swiss --out diamond_results.txt -p 4 --max-target-seqs 500
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