CardiAP

Copyright © 2020-2021 Velez Rueda, Garcia Smith, Sommese

Python library for performing biomedical images analysis. Cardilib allows users to easily work with images confocal microscopy, and obtain representative amplitude and kinetics data.

Installation

# Create and active a virtual env
$ python3 -m venv .venv
$ source .venv/bin/activate
# install the project
$ pip install -e .

Running tests

# install tox
$ pip install tox
# execute tox
$ tox

Publishing project

# update package version in setup.cfg
# them run these command:
$ git commit setup.cfg -m "update to version <version>"
$ git tag <version>
$ git push origin HEAD --tags
# build the package
$ tox -e build
# publish to test.pypi
$ tox -e publish 
# publish to pypi
$ tox -e publish -- --repository pypi

Using cardilib on line

You can find a web server for using cardilib hosted in Binder. You can launch CardiAP here