Fix pytest errors

Clinical-Genomics-Lund · Aug 23, 2024 · 86cf833 · 86cf833
1 parent f3493c5
commit 86cf833
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/tests/parse/test_variant.py b/tests/parse/test_variant.py
@@ -6,11 +6,11 @@ def test_parse_sv_variants(mtuberculosis_sv_vcf_path):
     """Test loading of varians."""
 
     variants = load_variants(mtuberculosis_sv_vcf_path)
-    assert len(variants) == 2
+    assert len(variants) == 3
 
 
 def test_parse_snv_variants(mtuberculosis_snv_vcf_path):
     """Test loading of varians."""
 
     variants = load_variants(mtuberculosis_snv_vcf_path)
-    assert len(variants) == 2
+    assert len(variants) == 3
diff --git a/tests/test_cli.py b/tests/test_cli.py
@@ -238,6 +238,7 @@ def test_add_igv_annotation_track(mtuberculosis_snv_vcf_path, simple_pipeline_re
             mtuberculosis_snv_vcf_path,
             "--bonsai-input-file",
             result_fname,
+            "--output",
             output_fname,
         ]
         result = runner.invoke(add_igv_annotation_track, args)