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@ryanjameskennedy ryanjameskennedy released this 28 Aug 12:07
· 45 commits to master since this release
v0.10.0
3f68f64
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Learn about vigilant mode.

[0.10.0]

Added

  • Added flag to set verbosity level.
  • Validate TbProfiler schema version.
  • Added CLI command for adding IGV annotation tracks
  • Added indel_variants to json result and ability to filter vcf into various categories

Fixed

  • Fixed genome_annotation appending bug
  • Fixed variant sorting as reference_sequence can be None

Changed

  • Updated sample metadata in the output format. RunMetadata was split into two fields, one for sequencing and one for pipeline information. Lims id and sample name are now included in the SampleBase object.
  • Split SV and SNV from tbprofiler output
  • Update annotate_delly to extract SVs from vcf
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