Skip to content

Issues: Clinical-Genomics-Lund/bonsai

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 102 Closed
25 Open 102 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add SKA clustering as an option enhancement New feature or request
#241 opened Nov 5, 2024 by mhkc
1
Fix bonsai table card issue bug Something isn't working frontend Front end related issues and features
#239 opened Nov 3, 2024 by ryanjameskennedy
@mhkc
Add NG50 to Quast card enhancement New feature or request frontend Front end related issues and features
#228 opened Oct 1, 2024 by ryanjameskennedy
@mhkc
Update or add new results to an existing sample backend Issues and features related to the backend enhancement New feature or request
#227 opened Oct 1, 2024 by mhkc
1
@mhkc
Add mlst scheme to output card enhancement New feature or request frontend Front end related issues and features
#226 opened Sep 27, 2024 by ryanjameskennedy
@mhkc
Add relevance category for approved variants enhancement New feature or request frontend Front end related issues and features
#221 opened Sep 12, 2024 by ryanjameskennedy
@mhkc
1
Approved structural variants need to appear in the overview enhancement New feature or request frontend Front end related issues and features
#216 opened Sep 6, 2024 by ryanjameskennedy
@mhkc
Add curate approval button for samples and tracking of sample activity enhancement New feature or request frontend Front end related issues and features
#215 opened Sep 5, 2024 by ryanjameskennedy
@mhkc
Sorting variants on WHO severity/genome position enhancement New feature or request frontend Front end related issues and features
#199 opened Jun 7, 2024 by svartapaerlan
Hide sourmash files when QC is rejected backend Issues and features related to the backend enhancement New feature or request
#198 opened Jun 7, 2024 by svartapaerlan
User creation results in bcrypt error backend Issues and features related to the backend bug Something isn't working
#181 opened Apr 21, 2024 by ryanjameskennedy
@mhkc
1
Conflicting UID and GID for containers backend Issues and features related to the backend enhancement New feature or request
#158 opened Mar 20, 2024 by mhkc
TB: two genes to look at specifically
#153 opened Mar 7, 2024 by LordRust
filter variant view on bed file
#152 opened Mar 7, 2024 by LordRust
Handle same sample id uploaded multiple times
#136 opened Jan 12, 2024 by LordRust
2
Frontend crash with 500 error if redis connection cant be established by the API backend Issues and features related to the backend bug Something isn't working frontend Front end related issues and features
#133 opened Jan 11, 2024 by mhkc
1
Entrypoint for adding custom metadata to samples enhancement New feature or request
#124 opened Jan 3, 2024 by mhkc Mycobacterium tuberculosis support
Move output parsers to Bonsai
#117 opened Jan 3, 2024 by mhkc Simplified uploading of samples
Upload script takes yaml file with file paths as input enhancement New feature or request
#116 opened Jan 3, 2024 by mhkc Simplified uploading of samples
Add JSDoc
#103 opened Nov 14, 2023 by mhkc
Find all samples with a given mutation or arg enhancement New feature or request
#95 opened Oct 23, 2023 by mhkc
Sample table links unaware of subpath bug Something isn't working frontend Front end related issues and features
#74 opened Oct 13, 2023 by alkc
1
@mhkc
2
Add shortcut actions to basket enhancement New feature or request
#23 opened Feb 23, 2023 by mhkc
Split comments into seperate collection
#22 opened Feb 23, 2023 by mhkc
@mhkc
Auth tokens are not refreshed bug Something isn't working
#15 opened Aug 4, 2022 by mhkc
@mhkc
ProTip! Add no:assignee to see everything that’s not assigned.