Add sequencing artifact manager #563

	name: Tests CI

	on: ["pull_request"]

	jobs:
	tests-coverage:

	runs-on: ubuntu-latest

	steps:
	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: 3.8

	- name: Check out limsmock
	uses: actions/checkout@v2
	with:
	repository: "Clinical-Genomics/limsmock"

	- name: Install limsmock dependencies
	run: \|
	python -m pip install --upgrade pip==21.1.2
	pip install -r requirements.txt -r requirements-dev.txt .

	- name: Check out cg_lims
	uses: actions/checkout@v2
	with:
	repository: "Clinical-Genomics/cg_lims"

	- name: Install cg_lims dependencies
	run: \|
	pip install -r requirements.txt -r requirements-dev.txt .

	- name: Install coveralls dependencies
	run: \|
	pip install pytest-cov coveralls

	- name: Test with pytest & Coveralls
	run: \|
	pytest --cov=cg_lims/
	coveralls
	env:
	GITHUB: 1
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}

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