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CU-8695q21f6: Replace rosalind links with S3 ones in docs (#489)
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mart-r authored Sep 16, 2024
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Expand Up @@ -122,12 +122,12 @@ If you have access to UMLS or SNOMED-CT, you can download the pre-built CDB and
A basic trained model is made public. It contains ~ 35K concepts available in `MedMentions`. This was compiled from MedMentions and does not have any data from [NLM](https://www.nlm.nih.gov/research/umls/) as that data is not publicaly available.

Model packs:
- MedMentions with Status (Is Concept Affirmed or Negated/Hypothetical) [Download](https://medcat.rosalind.kcl.ac.uk/media/medmen_wstatus_2021_oct.zip)
- MedMentions with Status (Is Concept Affirmed or Negated/Hypothetical) [Download](https://cogstack-medcat-example-models.s3.eu-west-2.amazonaws.com/medcat-example-models/medmen_wstatus_2021_oct.zip)

Separate models:
- Vocabulary [Download](https://medcat.rosalind.kcl.ac.uk/media/vocab.dat) - Built from MedMentions
- CDB [Download](https://medcat.rosalind.kcl.ac.uk/media/cdb-medmen-v1_2.dat) - Built from MedMentions
- MetaCAT Status [Download](https://medcat.rosalind.kcl.ac.uk/media/mc_status.zip) - Built from a sample from MIMIC-III, detects is an annotation Affirmed (Positve) or Other (Negated or Hypothetical)
- Vocabulary [Download](https://cogstack-medcat-example-models.s3.eu-west-2.amazonaws.com/medcat-example-models/vocab.dat) - Built from MedMentions
- CDB [Download](https://cogstack-medcat-example-models.s3.eu-west-2.amazonaws.com/medcat-example-models/cdb-medmen-v1.dat) - Built from MedMentions
- MetaCAT Status [Download](https://cogstack-medcat-example-models.s3.eu-west-2.amazonaws.com/medcat-example-models/mc_status.zip) - Built from a sample from MIMIC-III, detects is an annotation Affirmed (Positve) or Other (Negated or Hypothetical)

## Acknowledgements
Entity extraction was trained on [MedMentions](https://github.com/chanzuckerberg/MedMentions) In total it has ~ 35K entites from UMLS
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