Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
adamyhe authored Dec 20, 2022
1 parent f07ade2 commit c8b1c3e
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
# Proseq2.0_mt
# Proseq2.0
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing. It is a new version of ProseqMapper (https://github.com/Danko-Lab/utils/tree/master/proseq).

Currently we provide two commands: proseq mapper and bigWig merge.

# MULTITHREADING:

This is a fork of the original [proseq2.0](https://github.com/Danko-Lab/proseq2.0.git) repo. This package 1) multithreads cutadapt and 2) executes all commands in `./proseq2.0.bsh` sequentially in the main shell (no farming out commands to the background with `&`. This should fix an issue in the original proseq2.0 where the script would randomly hang.
This is a fork of the original [proseq2.0](https://github.com/Danko-Lab/proseq2.0.git) repo. This package 1) multithreads cutadapt and 2) executes all commands in `./proseq2.0.bsh` sequentially in the main shell (no farming out commands to the background with `&`. This should fix an issue in the original proseq2.0 where the script would randomly hang on the `wait` lines.

## Overview
Our proseq2.0 pipeline will take single-end or paired-end sequencing reads in fastq.gz format as input. The pipeline will automate three routine pre-processing and alignment options, including
Expand Down

0 comments on commit c8b1c3e

Please sign in to comment.