Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Genome index compatibility #4

Open
CesarArenas-Mena opened this issue Nov 29, 2021 · 0 comments
Open

Genome index compatibility #4

CesarArenas-Mena opened this issue Nov 29, 2021 · 0 comments

Comments

@CesarArenas-Mena
Copy link

In line 873 and 1166 of proseq2.0.bsh, | grep "_" -v | will clear everything from genomes that use underscores in their contig or chromosome annotation, such as NW_022144746.1.
edmundmiller added a commit to nf-core/nascent that referenced this issue Mar 31, 2024
@edmundmiller
fix(dreg): Remove grep "_" -v
1bc468c 
Think this is breaking the analysis
Danko-Lab/proseq2.0#3
Danko-Lab/proseq2.0#4
cmuyehara/proseq2.0@b4349ba
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@CesarArenas-Mena