Skip to content

Commit

Permalink
fix(dreg): Remove grep "_" -v
Browse files Browse the repository at this point in the history
  • Loading branch information
edmundmiller committed Mar 31, 2024
1 parent d0aead9 commit 1bc468c
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion modules/local/dreg_prep/templates/proseq2.0
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ readCount=`zcat ${prefix}.bed.gz | wc -l`
echo \${readCount}

## Remove rRNA and reverse the strand (PRO-seq).
zcat ${prefix}.bed.gz | grep "rRNA\\|chrM" -v | grep "_" -v | sort -k 1,1 -k2,2n - | gzip >${prefix}.nr.rs.bed.gz
zcat ${prefix}.bed.gz | grep "rRNA\\|chrM" -v | sort -k 1,1 -k2,2n - | gzip >${prefix}.nr.rs.bed.gz
echo 'Number of mappable reads (excluding rRNA):'
echo `zcat ${prefix}.nr.rs.bed.gz | wc -l`

Expand Down

0 comments on commit 1bc468c

Please sign in to comment.