Remove unused modules

ugali/analysis/farm.py

@@ -3,12 +3,10 @@
 Dispatch the likelihood scan to a cluster.
 """
 
-import os,sys
-from os.path import join, exists
+import os
+from os.path import join
 import shutil
-import subprocess
 import time
-import glob
 
 import numpy as np
 import healpy as hp
@@ -17,9 +15,9 @@
 import ugali.utils.skymap
 import ugali.utils.batch
 
-from ugali.utils.projector import gal2cel,cel2gal
-from ugali.utils.healpix import subpixel,superpixel,query_disc
-from ugali.utils.healpix import pix2ang,ang2vec,read_partial_map
+from ugali.utils.projector import gal2cel
+from ugali.utils.healpix import query_disc
+from ugali.utils.healpix import pix2ang,ang2vec
 from ugali.utils.logger import logger
 from ugali.utils.shell import mkdir
 

ugali/analysis/imf.py

@@ -7,8 +7,6 @@
 import numpy as np
 import scipy.interpolate
 
-from ugali.utils.logger import logger
-
 ############################################################
 
 class IMF(object):

ugali/analysis/kernel.py

@@ -3,8 +3,6 @@
 Spatial kernels for dwarf galaxies.
 """
 
-import sys
-import inspect
 from abc import abstractmethod
 from collections import OrderedDict as odict
 import copy
@@ -14,10 +12,9 @@
 import scipy.integrate
 import scipy.interpolate
 
-import ugali.utils.projector
 from ugali.utils.projector import Projector, angsep
 from ugali.analysis.model import Model, Parameter
-from ugali.utils.healpix import ang2vec, ang2pix, query_disc, ang2disc
+from ugali.utils.healpix import ang2vec, ang2pix, ang2disc
 
 from ugali.utils.logger import logger
 

ugali/analysis/loglike.py

@@ -3,28 +3,23 @@
 Implementation of the (log) likelihood function.
 """
 from collections import OrderedDict as odict
-import copy
 import time
 
-import numpy
 import numpy as np
-from scipy.stats import norm
 
 import healpy as hp
 import fitsio
 
 import ugali.utils.binning
 import ugali.utils.parabola
 
-from ugali.utils.projector import angsep, gal2cel
+from ugali.utils.projector import angsep
 from ugali.utils.healpix import ang2pix,pix2ang,ang2disc
 from ugali.utils.logger import logger
 
 from ugali.utils.config import Config
 from ugali.analysis.source import Source
 
-from ugali.analysis.kernel import EllipticalDisk, ToyKernel
-
 class Observation(object):
     """
     Dummy class for storing catalog, roi, mask and other quantities

ugali/analysis/results.py

@@ -7,9 +7,7 @@
 
 import numpy as np
 import yaml
-import numpy.lib.recfunctions as recfuncs
 
-import astropy.coordinates
 from astropy.coordinates import SkyCoord
 import astropy.units as u
 
@@ -20,7 +18,7 @@
 from ugali.utils.stats import Samples
 from ugali.utils.projector import dist2mod,mod2dist
 from ugali.utils.projector import cel2gal,gal2cel,gal2cel_angle
-from ugali.utils.projector import ang2const, ang2iau
+from ugali.utils.projector import ang2const
 from ugali.utils.config import Config
 from ugali.utils.logger import logger
 

ugali/analysis/scan.py

@@ -2,25 +2,21 @@
 """
 Create and run an individual likelihood analysis.
 """
-import os
-import sys
+
 from collections import OrderedDict as odict
 
-import numpy
 import numpy as np
-import healpy
 import fitsio
 
 import ugali.utils.skymap
 import ugali.analysis.loglike
 from ugali.analysis.loglike import LogLikelihood, createSource, createObservation
-from ugali.analysis.source import Source
 from ugali.utils.parabola import Parabola
 
 from ugali.utils.batch import LSF
 from ugali.utils.config import Config
 from ugali.utils.logger import logger
-from ugali.utils.healpix import superpixel, subpixel, pix2ang, ang2pix
+from ugali.utils.healpix import ang2pix
 from ugali.utils.healpix import write_partial_map
 
 ############################################################

ugali/analysis/search.py

@@ -4,19 +4,16 @@
 """
 
 import os
-import copy
-import subprocess
 from collections import OrderedDict as odict
 import glob
 
 import healpy
 import fitsio
 import numpy as np
-import numpy
 import numpy.lib.recfunctions as recfuncs
 import scipy.ndimage as ndimage
 
-from ugali.utils.shell import mkdir, which
+from ugali.utils.shell import mkdir
 from ugali.utils.logger import logger
 from ugali.utils.binning import reverseHistogram
 from ugali.utils.projector import Projector,gal2cel,cel2gal,ang2iau,mod2dist

ugali/candidate/associate.py

@@ -1,18 +1,15 @@
 #!/usr/bin/env python
 import os,sys
-from os.path import join,abspath,split
 import inspect
 from collections import OrderedDict as odict
 
 import numpy as np
-from numpy.lib.recfunctions import stack_arrays
 import fitsio
 
 import ugali.utils.projector
 from ugali.utils.projector import gal2cel, cel2gal
 import ugali.utils.idl
-from ugali.utils.healpix import ang2pix
-from ugali.utils.shell import get_ugali_dir, get_cat_dir
+from ugali.utils.shell import get_cat_dir
 from ugali.utils.logger import logger
 
 #class Catalog(np.recarray):

ugali/isochrone/composite.py

@@ -4,15 +4,12 @@
 """
 __author__ = "Alex Drlica-Wagner"
 
-import sys
-import os
 from collections import OrderedDict as odict
 from functools import wraps
 
 import numpy as np
 
-from ugali.analysis.model import Model, Parameter
-from ugali.utils.logger import logger
+from ugali.analysis.model import Parameter
 from ugali.isochrone.model import IsochroneModel, Isochrone
 from ugali.isochrone.mesa import Dotter2016
 from ugali.isochrone.parsec import Marigo2017

ugali/isochrone/dartmouth.py

@@ -4,20 +4,16 @@
 http://stellar.dartmouth.edu/models/isolf_new.php
 """
 import os
-import sys
-import glob
 import copy
 from collections import OrderedDict as odict
 
-import re
 try:
     from urllib.parse import urlencode
     from urllib.request import urlopen
 except ImportError:
     from urllib import urlencode
     from urllib2 import urlopen
 
-import tempfile
 import subprocess
 from collections import OrderedDict as odict
 

ugali/isochrone/empirical.py

@@ -5,8 +5,8 @@
 import os
 from collections import OrderedDict as odict
 
-from ugali.analysis.model import Model, Parameter
-from ugali.utils.shell import mkdir, get_ugali_dir, get_iso_dir
+from ugali.analysis.model import Parameter
+from ugali.utils.shell import get_iso_dir
 from ugali.isochrone.parsec import PadovaIsochrone
 
 class EmpiricalPadova(PadovaIsochrone):

ugali/isochrone/mesa.py

@@ -4,8 +4,6 @@
 http://waps.cfa.harvard.edu/MIST/iso_form.php
 """
 import os
-import sys
-import glob
 import copy
 import tempfile
 import subprocess

ugali/isochrone/model.py

@@ -28,14 +28,10 @@
 
 # FIXME: Need to vectorize CMD and MMD calculation
 
-import sys
 import os
-from abc import abstractmethod
 import collections
 from collections import OrderedDict as odict
-import inspect
 import glob
-from functools import wraps
 
 import numpy as np
 import scipy.interpolate
@@ -46,10 +42,9 @@
 import ugali.analysis.imf
 from ugali.analysis.model import Model, Parameter
 from ugali.utils.stats import norm_cdf
-from ugali.utils.shell import mkdir, get_ugali_dir, get_iso_dir
+from ugali.utils.shell import mkdir, get_iso_dir
 from ugali.utils.projector import mod2dist
 
-from ugali.utils.config import Config
 from ugali.utils.logger import logger
 
 ############################################################

ugali/isochrone/padova.py

@@ -9,8 +9,7 @@
 
 import numpy as np
 
-from ugali.analysis.model import Model, Parameter
-from ugali.utils.shell import mkdir, get_ugali_dir, get_iso_dir
+from ugali.utils.shell import get_iso_dir
 from ugali.isochrone.model import Isochrone
 from ugali.isochrone.parsec import Marigo2017 as Padova
 from ugali.isochrone.parsec import defaults_27

ugali/isochrone/parsec.py

@@ -3,8 +3,6 @@
 http://stev.oapd.inaf.it
 """
 import os
-import sys
-import glob
 import copy
 from collections import OrderedDict as odict
 
@@ -21,7 +19,6 @@
 import re
 
 import numpy as np
-import scipy.spatial
 
 from ugali.utils.logger import logger
 from ugali.isochrone.model import Isochrone

ugali/observation/catalog.py

@@ -9,7 +9,7 @@
 
 from ugali.utils.config import Config
 from ugali.utils.projector import gal2cel,cel2gal
-from ugali.utils.healpix import ang2pix,superpixel
+from ugali.utils.healpix import ang2pix
 from ugali.utils.logger import logger
 from ugali.utils.fileio import load_infiles
 from ugali.utils import mlab

ugali/observation/mask.py

@@ -8,7 +8,6 @@
     someFunction
 """
 
-import os
 import numpy as np
 import healpy as hp
 import scipy.signal
@@ -20,7 +19,6 @@
 from ugali.utils import healpix
 
 from ugali.utils.logger import logger
-from ugali.utils.healpix import ang2pix
 from ugali.utils.config import Config
 from ugali.utils.constants import MAGERR_PARAMS
 ############################################################

ugali/pipeline/run_01.0_download_data.py

@@ -3,7 +3,6 @@
 from os.path import join
 
 from ugali.analysis.pipeline import Pipeline
-from ugali.preprocess.database import databaseFactory
 from ugali.utils.shell import mkdir
 
 #components = ['data','isochrone']

ugali/pipeline/run_03.0_likelihood.py

@@ -2,9 +2,7 @@
 """Run the likelihood search."""
 import glob
 import os
-from os.path import join, exists, basename
-
-import numpy as np
+from os.path import join, exists
 
 from ugali.analysis.farm import Farm
 from ugali.analysis.pipeline import Pipeline

ugali/pipeline/run_04.0_peak_finder.py

@@ -1,15 +1,13 @@
 #!/usr/bin/env python
 """Perform object finding and association."""
-import os, glob
+import os
 from os.path import exists, join
 import time
 
 import fitsio
-import numpy as np
 
 from ugali.analysis.pipeline import Pipeline
 from ugali.analysis.search import CandidateSearch
-import ugali.candidate.associate
 
 from ugali.utils.logger import logger
 from ugali.utils.shell import mkdir

ugali/pipeline/run_05.0_followup.py

@@ -1,7 +1,6 @@
 #!/usr/bin/env python
 """Perform MCMC follow-up fitting."""
 
-import os
 from os.path import join,exists,basename,splitext
 import shutil
 from collections import OrderedDict as odict
@@ -12,13 +11,10 @@
 #try:             os.environ['DISPLAY']
 #except KeyError: matplotlib.use('Agg')
 
-import numpy
-import numpy as np
 import yaml
 import fitsio
 
 from ugali.analysis.pipeline import Pipeline
-from ugali.analysis.scan import Scan
 import ugali.analysis.source
 import ugali.analysis.loglike
 import ugali.analysis.results

ugali/pipeline/run_06.0_simulate.py

@@ -9,7 +9,6 @@
 import shutil
 
 import numpy as np
-import numpy.lib.recfunctions as recfuncs
 import fitsio
 
 from ugali.analysis.pipeline import Pipeline
@@ -19,7 +18,6 @@
 
 from ugali.utils.shell import mkdir
 from ugali.utils.logger import logger
-from ugali.utils.healpix import pix2ang
 
 #components = ['simulate','analyze','merge','plot']
 components = ['analyze','merge']

ugali/preprocess/database.py

@@ -1,6 +1,6 @@
 #!/usr/bin/env python
 
-import os, sys
+import os
 import re
 import io
 import subprocess