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Upgrade dependencies 2024-10-28 (#6663) #6685

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Upgrade dependencies 2024-10-28 (#6663) #6685

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Commits on Nov 6, 2024

  1. Ran make docker_images.json

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    achave11-ucsc committed Nov 6, 2024
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  2. Bump werkzeug from 3.0.3 to 3.0.6 (PR #6660)

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    achave11-ucsc committed Nov 6, 2024
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  3. [R] Ran make requirements_update

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    achave11-ucsc committed Nov 6, 2024
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  4. Update PyCharm to 2024.2.4-37 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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  5. Update Elasticsearch to 7.17.25-30 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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  6. Update BigQuery to 0.4.4-16 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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  7. Update GitLab to 17.5.1-ce.0 and runner to ubuntu-v17.5.3 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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  8. Update ClamAV to 1.4.1-11 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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  9. Update GitLab AMI to v10 (#6663)

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    achave11-ucsc committed Nov 6, 2024
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