FE-349 add data clean up to hca ingest manifest.py #33
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Validate Python | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| python-validation: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| ENV: test | |
| steps: | |
| - uses: actions/checkout@v2 | |
| # Needed by sonar to get the git history for the branch the PR will be merged into. | |
| with: | |
| fetch-depth: 0 | |
| - uses: google-github-actions/[email protected] | |
| with: | |
| project_id: ${{ secrets.DEV_PROJECT_ID }} | |
| service_account_key: ${{ secrets.GCP_TEST_KEY }} | |
| export_default_credentials: true | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9.16 | |
| - name: Install Poetry | |
| uses: snok/[email protected] | |
| with: | |
| version: 1.1.9 | |
| - name: Cache dependencies | |
| uses: actions/cache@v2 | |
| env: | |
| cache-name: cache-poetry-v2 | |
| with: | |
| path: ~/.cache/pypoetry | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('./orchestration/pyproject.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-build-${{ env.cache-name }}- | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - name: Install dependencies | |
| id: dependencies | |
| run: poetry install | |
| working-directory: ${{ github.workspace }}/orchestration | |
| - name: Enforce coding style guide | |
| run: poetry run autopep8 --recursive --diff --exit-code . | |
| working-directory: ${{ github.workspace }}/orchestration | |
| if: always() && steps.dependencies.outcome == 'success' # run all three checks, even if a prior check fails | |
| - name: Check static types | |
| run: poetry run mypy | |
| working-directory: ${{ github.workspace }}/orchestration | |
| if: always() && steps.dependencies.outcome == 'success' # run all three checks, even if a prior check fails | |
| - name: Run test suite | |
| run: poetry run pytest -v | |
| # for debugging. | |
| # run: poetry run pytest -v -k "ingress" | |
| working-directory: ${{ github.workspace }}/orchestration | |
| if: always() && steps.dependencies.outcome == 'success' # run all three checks, even if a prior check fails |