Replace AngularJS recon portal with React #1369

* add tapipy; Tapis v3 OAuth token and flow * add docstrings to test methods * update service account to use Tapis * remove future imports * uncomment agave imports * add TapisOAuthToken model migration * fix bugs * remove attrdict for agavepy * pylint: ignore test files * fix ignore unit test regex * fix login url * formatting; remove AgaveOAuthToken references * add test settings for tapisv3 * fix auth/views_unit_test.py * fix backends unit test * formatting * task/DES-2654: Tapis v2/v3 apps model (#1158) * v3 apps model * make appId required field * add AppBundle model * updated model admin * update models and add migration * rework app tray models * squash appitem and appbundle * un-squash migrations * remove faulty app description migration * Use an inline admin form to manage app variants within bundles (#1164) Co-authored-by: Sal Tijerina <[email protected]> * model adjustments * model adjustments; add category pop migration --------- Co-authored-by: Jake Rosenberg <[email protected]> * fix fixture import * skip tapisv2 tests; add todov3 notes; fix fixture * remove unnecessary commented code --------- Co-authored-by: Jake Rosenberg <[email protected]>

* add apps views * add AppDescriptionView * TapisTokenRefreshMiddleware: redirect to login if expired * formatting * fix bugs; add AuthenticatedApiView class * update apps call for v3 * separate linting from unit tests in workflow * formatting * formatting * add uuidv4 * tests * fix uuid import * tests * fix formatting * set allowJS to true in tsconfig * add uuid types * rename docker tags and volumes to not conflict with main branch * fix volumes * add tags, description, is_simcenter; some reorg * remove broken source mapping * squash migrations * split websockets; clean up nginx.debug.conf * change staticfiles dirs to align with deployed config; nginx: /var, django: /srv * formatting

* add apps views * add AppDescriptionView * TapisTokenRefreshMiddleware: redirect to login if expired * formatting * fix bugs; add AuthenticatedApiView class * update apps call for v3 * separate linting from unit tests in workflow * formatting * formatting * add uuidv4 * tests * fix uuid import * tests * fix formatting * set allowJS to true in tsconfig * add uuid types * rename docker tags and volumes to not conflict with main branch * fix volumes * add tags, description, is_simcenter; some reorg * remove broken source mapping * squash migrations * split websockets; clean up nginx.debug.conf * change staticfiles dirs to align with deployed config; nginx: /var, django: /srv * formatting * add jobs views; update workspace UI * fix client linting and tests * fix some server side tests * add getUseJobs hook * add job detail spinner * add usePostJobs * fix webhooks tests * server side linting and tests * formatting * fix unit test * add CSRF_TRUSTED_ORIGINS setting * add m1 makefile targetsg

* Use Django to serve static files in debug mode * clean up volumes; remove local nginx static and media locations * add back /data/media mount * add media back to nginx; same locations as main --------- Co-authored-by: Sal Tijerina <[email protected]>

* Build and serve React assets * fix template string * Add custom render block for react assets

* clean up unused files; add development docker build target; fix workspace react-assets ref * fix data depot react-assets ref * docker-compose fix; combine python-base and builder-base steps (#1191) * docker-compose fix; combine python-base and builder-base steps * revert rabbitmq images * parity between intel/m1 rabbit versions * Revert "parity between intel/m1 rabbit versions" This reverts commit 9f5b709. * add newline * revert .gitignore changes --------- Co-authored-by: Jake Rosenberg <[email protected]>

* add view decorator using Tapis JWT auth * Update designsafe/apps/api/decorators.py Co-authored-by: Nathan Franklin <[email protected]> * Add method decorator on project instance view --------- Co-authored-by: Nathan Franklin <[email protected]>

* Remove obsolete version param * Update README for building development images

* Get project creation, updates, and type changes working end-to-end * projects creation/curation/publication works end-to-end * import error fix * remove print/console.log statements

* formatting/type errors * tweak for pi array check, updated placeholder text * initial work minus file listing for nees publication details * reworking top level data styling * updated citation modal title * first pass at adding file listing * fix: app card design bugs DES-2741 through DES-2745 (#1223) * fix: DES-2471, DES-2472, DES-2473 bugs (#1221) * fix: DES-2744 hover and focus card UI (#1224) * hotfix: des 2745 global font icon size tweaks (#1225) * refactor: des-2745 rename DS font icons stylesheet * fix: des-2745 load DS font icons + allow customize * chore: des-2745 obvious app-card font icon space * fix: des-2745 use rem not em for icon–title space * fix: des-2745 DS font icons not found * feat: des-2745 re-align certain DS font icons * feat: des-2745 re-position certain DS font icons * chore: des-2745 use (proper) `::before` syntax * fix: des-2745 title alignment after icon resize * fix: DES-2766 app with 1 variant needs diff list (#1232) * fix: DES-2766 app with 1 variant needs diff list * fix: DES-2766 more padding (designer request) * formatting * add nees listing breadcrumbs * add breadcrumbs * fix breadcrumbs --------- Co-authored-by: Jake Rosenberg <[email protected]> Co-authored-by: Wesley B <[email protected]>

* Normalize path to be consistent * Remove some unneeded fixgtures --------- Co-authored-by: Jake Rosenberg <[email protected]>

…e two systems (#1183) * Add encryption and system access util from CEP * Add pycryptodome package * Update login to use tapisv3 to configure the two systems * Fix linting * Fix linting/black issues * Fix lockfile * Refactor to have parameter path and also use AGAVE_WORKING_SYSTEM via keyservice * Update test settings for +AGAVE_WORKING_SYSTEM * Add retry --------- Co-authored-by: Jake Rosenberg <[email protected]> Co-authored-by: Sal Tijerina <[email protected]>

* working search bars in data files/published areas * update test settings

* working search bars in data files/published areas * Working V3 move/copy modals * Get toolbar buttons working and enabled/disabled correctly depending on context.

* migrate file listing table and breadcrumbs to common component module for use in Apps * pass pipeline without tests

* Add placeholder/error UI for listings; add Data Diagram for pubs * improve line wrapping in Data Diagram for entities with long names * refinements to publication ingest and display

* Move project fixture higher up to use in view testing * Allow jwt access for updating project metadata --------- Co-authored-by: Jake Rosenberg <[email protected]>

* add apps views * add AppDescriptionView * TapisTokenRefreshMiddleware: redirect to login if expired * formatting * fix bugs; add AuthenticatedApiView class * update apps call for v3 * separate linting from unit tests in workflow * formatting * formatting * add uuidv4 * tests * fix uuid import * tests * fix formatting * set allowJS to true in tsconfig * add uuid types * rename docker tags and volumes to not conflict with main branch * fix volumes * add tags, description, is_simcenter; some reorg * remove broken source mapping * squash migrations * split websockets; clean up nginx.debug.conf * change staticfiles dirs to align with deployed config; nginx: /var, django: /srv * formatting * add jobs views; update workspace UI * fix client linting and tests * fix some server side tests * add getUseJobs hook * add job detail spinner * add usePostJobs * fix webhooks tests * server side linting and tests * formatting * fix unit test * add useGetApps hook; app routing * move tapis types to types file * add spinner; cleanup * add CSRF_TRUSTED_ORIGINS setting * add m1 makefile targetsg * formatting * wip: appswizard and layout * wip: apps routing; prefetch app listing data * remove await/defer * fix m1 django command * formatting; linting; 1s stale time * use wsgi for django server locally with working staticfiles * wip: cleanup * remove /applications sub path for tools & apps url * fix backend response for private apps * install zod; tanstack form * add workspace utils; apps submission form * cleanup unused styles * wip * install zod; tanstack form * add workspace utils; apps submission form * cleanup unused styles * remove version from docker compose files * data loads * working back * state persists * clean up * remove unused dependencies * working reset * working submission * update antd; add SystemsPushKeysModal * add ssh keys manager; system push keys endpoint * push keys backend * reset push keys form on success * reorg apps view components * set defaultSystem in app response * better param handling; fix apps view settins * add systems hooks and views * use prefetching to speed up load time * fix submit status * add app icon * add job submit messages * Task/DES-2656 apps sidebar (#1202) * -Adds accordion ant sidebar -Need to update to allow more than one category to be open at once -Needs styles * Change from Panels to Menu Ant components * -Adds ant menu and submenus with children rather than with item prop passed to menu * Adds unit test to app AppSideNav * - Fixed unit test * WIP ant d Menu * WIP * side nav submenus * - Adds styles per mockup - Adds WIP collapse icon and state to manage it - Adds working subnav of application bundles * - Removes unnecessary toggle because antd menu handles appropriately - Removes broken expand icon logic * fix unbundled item render; formatting --------- Co-authored-by: Sal Tijerina <[email protected]> * Task/des 2631 apps breadcrumb (#1188) * Add AppsBreadcrumb component and integrate it into WorkspaceBaseLayout * Refactor AppsBreadcrumb and AppsSideNav components * Add appsListingJson import and modify breadcrumb rendering * Refactor path modification logic in WorkspaceBaseLayout.tsx * Update subproject commit hash * Fix archiveSystemDir formatting in JobsView * Update SITE_ID values in site configuration files * Update subproject commit hash * Fix formatting issues in code * Update app names and formatting * Update SITE_ID values in site configuration files * Remove unused code and imports * Add Tapis operations to datafiles handlers * Remove unused React assets from base template * Update React and database configurations * Update datafiles handlers and workspace views * Replace Tapis operations with Agave operations * Update import statement for service_account * Fix formatting in data_depot.j2 template * Fix formatting issues in data_depot.j2 template * Fix formatting and add missing newline at end of file * retrigger checks * Refactor JobsDetailModal component * Add AppsBreadcrumb component and update layout styles * Refactor AppsBreadcrumb module CSS and fix function formatting * Remove unused import statement in WorkspaceBaseLayout.tsx * Fix modifiedPath for Job Status * Refactor path modification in WorkspaceBaseLayout.tsx * Add app data and loading state to AppsBreadcrumb component * updated AppsBreadcrumb * update to Job Status label * refactor breadcrumb code from WorkspaceBaseLayout into AppsBreadcrumb * disable app form for testing on this branch * Refactor AppsBreadcrumb component to improve breadcrumb rendering; no link for last item * Refactor AppsBreadcrumb component to improve breadcrumb rendering and remove last item link; change separator from / to > * Refactor AppsBreadcrumb component to improve breadcrumb rendering and remove last item link; change separator from / to > * remove suspense query * revert reversion of suspense * remove portal dir --------- Co-authored-by: Sal Tijerina <[email protected]> * linting * linting and refactor breadcrumb * linting * layout adjustments * more styling * fix user guide link * fix tests; fix tags and labels for description list * Bug DES-2762: Adding key to avoid optimization from Antd (#1233) Co-authored-by: Sal Tijerina <[email protected]> * fix linting * add typing * add more typing * working Edit button * fix type * fix username render * more linting fixes * more typing * finish typing * linting * fix content hash * Tasks/DES-2630: App Form styling (#1241) * App Form Styling according to design (first version) * Lint fix for FormField * More lint fixes * Common Component Button and font increase * Fix typescript error * Fix type error --------- Co-authored-by: Sal Tijerina <[email protected]> * fix accessor error * fix workspace prod template * fix is_bundled computed value; fix missing label * Support html apps (#1244) * support html apps * linting * task/DES-2758, DES-2747: Tapis v3 Job Notifications (#1245) * fix job sumbit error render * fix tapipy error propogation * job status notifications * fix state redirect on notification update by removing angular code from workspace * only render data_depot events * propogate error for ApiException * add message to notification events for bell dropdown * DES-2749: Handle changes to queue (#1246) Co-authored-by: Sal Tijerina <[email protected]> * fix common exports * Bug/DES-2778: Handle number validation in App Form (#1250) * Bug/DES-2778: Fix validation for number input in App Form * Fix merge issue * Lint fix * fix app variant href * fix persistent previous app state in step * fix: allow compute max run time when no queue in VM case * fix toasts for data_depot events * more explicitly ignore jobs events * fix errant root: declaration * default open app * Bug/DES-2786: Use key to make sure app instance is created on navigation (#1251) * Bug/DES-2786: Use key to make sure app instance is created on navigation Fix state issues * Remove un-necessary field init * App Form step and summary rendering fixes (#1252) Initial working version * task/des-2657--job-history-listing (#1239) * Add support for displaying node count and cores per node in JobsListing component * Add support for displaying archive system directory in JobsListing component * interactive session modal; styling * wip: notification badge * linting * add todo notes --------- Co-authored-by: Sal Tijerina <[email protected]> * disable notifs in job status nav * task/DES-2779: Jobs Listing Notification Badge & Update Job Listing Upon Notification (#1253) * update notification badge and listing when job updates; enable job listing buttons * linting * linting * fix app ordering * remove unused import * tasks/DES-2655: Select file modal in Apps Form (#1254) * Create SelectModal for file selection * Handle public vs private * Use isMyData to check if this is private or public --------- Co-authored-by: Sal Tijerina <[email protected]> * task/DES-2713 job history modal (#1234) * - Adds View Details modal for job status listings - Adds working output link button (may need to check I'm directing to the correct path) - Does not add a functioning delete button - Adds modal with the design based of current DS Job Detail Modal * -Adds closing/cancel action - Doesn't handle state correctly for closing - Buttons and links don't work yet * - Adds state handling for open/close modal * Adds linting changes * Adds linting * Uses PrimaryButton component * Task/des 2713 job history modal adjustments (#1257) * url nav for job modal; working buttons * fix data files links --------- Co-authored-by: Sal Tijerina <[email protected]> * render job detail on top of listing * DES-2629: Use portal names to build list. (#1258) * fix Tools & Applications link * DES-2789: Only validate current steps on continue button (#1260) * Apps form styling fixes (#1262) * DES-2818: add missing license prompt * fix submit button; submission details css; standard button width; standard font family * job status header; small job action buttons * larger summary item label width * adjust spacing * revert helvetica default * fix button size on job detail modal * use base Button for link type * linting * Remove htmltype submit on continue button (#1263) * task/DES-2755 + DES-2756: Allocations backend + hooks (#1247) * Allocations backend w/ TAS hookup * Add Allocations elasticsearch model + add model to elasticsearch settings * Add allocation type * Add useGetAllocations hook * Add TAS env variables to django settings * Add UserAllocations model * Use UserAllocations model in view * Update designsafe/apps/workspace/api/views.py Co-authored-by: Jake Rosenberg <[email protected]> * Pylint errors fixes * Create util function for grabbing user allocations and creating/updating their cached allocations * Add async allocations cache update to login flow * Roll back elasticsearch implementation * Pylint fixes for allocations model * fix unit test * Roll back elasticsearch changes to IndexedApp * Resolve pylint errors on allocations model * Fix client linting errors * Fix poetry black reformatting checks * task/DES-2820: Allocations in App Form (#1264) * use allocations in app form * use dynamic user model; fix task * fix linting * fix type error * fix test * linting --------- Co-authored-by: Garrett Edmonds <[email protected]> Co-authored-by: Sal Tijerina <[email protected]> Co-authored-by: Jake Rosenberg <[email protected]> Co-authored-by: Garrett Edmonds <[email protected]> --------- Co-authored-by: sophia-massie <[email protected]> Co-authored-by: Van Go <[email protected]> Co-authored-by: Chandra Y <[email protected]> Co-authored-by: Jake Rosenberg <[email protected]> Co-authored-by: Garrett Edmonds <[email protected]> Co-authored-by: Garrett Edmonds <[email protected]> Co-authored-by: Garrett Edmonds <[email protected]>

* Fixes for project/publication testing session items * layout fixes and explanation for pipeline select * fixes for file tags and operations on published files * use filetype-specific icons * various pipeline fixes * add Best Practices modal and fix ingest for legacy simulations * add version changes modal * linting/type fixes

* update placeholder job listing message * fix interactive modal state

* - Adds spacing styles and header to AppsSideNav - Removes unused style with comment * - Adds border to sider nav menu * - Linting * - Linting * - Removes AppNavLink component - Removes display block from Title div so that justify content style applies - Change font for title to match design - Change color of right nav border to match design * -Change item height of nav bar - Removes css module for AppsSideNav --------- Co-authored-by: Sal Tijerina <[email protected]>

* docs: Tapis v3 changes to "First time setup" №3 * docs: Do not use `[!NOTE]` syntax

* - Moves app sider styles to workspace specificity to avoid changing Data Depot sider style * - Linting

* DES-2655: Select Modal Design work * Adjust modal body to new global styles * Address review comments * fix lint

* commit to main * Add useCitationMetrics hook for fetching citation metrics in publications module * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Add MetricsModal to project modals and update Datacite API endpoints * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor ProjectCitation module and styles, and add DownloadCitation component * Refactor ProjectCitation module and styles, and add DownloadCitation component * chore: Refactor ProjectCitation module, add DOI link to PublishedCitation * Refactor ProjectCitation module, add DOI link to PublishedCitation * chore: Update Docker images and volumes configuration for development environment * Refactor ProjectPreview module, fix useState declaration * Refactor useState declaration in ProjectPreview module * Refactor ProjectCitation module, optimize DOI retrieval and usage * feat: Optimize DOI retrieval and usage in ProjectCitation module * Refactor ProjectCitation module, optimize DOI retrieval and usage * Refactor ProjectCitation module, remove commented out code for MetricsModal * Update index.ts --------- Co-authored-by: Jake Rosenberg <[email protected]>

* fix SystemsPushKeysModal: error handling; onSuccess callback; layout; info text * show missing allocation message * rm unuseful comment * open View User Guide in new tab * point notifications to job history; remove apps and jobs from dashboard

* Configure cloud.data on login * Update test settings and todo comments * Rename setting * Remove listing check in from view Checkin and configuring occurs only in the task now * Move task to an onboarding queue --------- Co-authored-by: Sal Tijerina <[email protected]>

* Add feedback and project download modals * link formatting * form/modal overflow fixes

* Add shortLabel for rendering in app side nav - add shortLabel to AppVariant model * Add shortLabel for rendering in app side nav - add shortLabel to relevant app views * Add shortLabel for rendering in app side nav - add shortLabel to frontend app types * Optionally render shortLabel for apps in side nav + update hover and selected colors for side nav menu items * Remove unused import * Linting fixes * include app notes.shortLabel in _get_public_apps response * fix submenu open key * update apps side nav border colors and weight (#1282) * Modify main themeConfig for design's #cbdded hover & select menu item color * Client linting fix * Change new appVariant field name to 'short_label' * Update references to 'shortLabel' to renamed 'short_label for AppVariant model * Linting fixes for new migration * Update designsafe/apps/workspace/api/views.py --------- Co-authored-by: Garrett Edmonds <[email protected]> Co-authored-by: Sal Tijerina <[email protected]>

* Select Modal fixes * Update usePathDisplayName.ts * Fix from merge issue - getPathName * Breadcrumb use system label

* commit to main * Add useCitationMetrics hook for fetching citation metrics in publications module * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Add MetricsModal to project modals and update Datacite API endpoints * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor ProjectCitation module and styles, and add DownloadCitation component * Refactor ProjectCitation module and styles, and add DownloadCitation component * chore: Refactor ProjectCitation module, add DOI link to PublishedCitation * Refactor ProjectCitation module, add DOI link to PublishedCitation * chore: Update Docker images and volumes configuration for development environment * Refactor ProjectPreview module, fix useState declaration * Refactor useState declaration in ProjectPreview module * Refactor ProjectCitation module, optimize DOI retrieval and usage * feat: Optimize DOI retrieval and usage in ProjectCitation module * Refactor ProjectCitation module, optimize DOI retrieval and usage * Refactor ProjectCitation module, remove commented out code for MetricsModal * Refactor DOI retrieval and usage in ProjectCitation module * test commit * Update index.ts

…ion bugs (#1287) * Retain system select based on input and validation fix * Fix test failure

…ject (#1292) * If an unauthenticated user now attempts to view a project, they will now be prompted to log in. Some styling changes done to make the JSX messages look like the Django error messages produced in file listings. * Ran a formatter * Minor change to make sure projectID and data were defined when used. * One last linting change.

select/deselect active Menu Item based on route

* unread notifs: only count unique jobs * disable JobActionButton after success; make cancel button red * fix scrolling on long app form * expand app side nav to 250px * disable app form while submitting * fix notifications fetching; highlight newest notification * remove DesignSafe-DCV as default allocation * fix next url param redirect; update login redirect setting to reflect production * use formatDateTimeFromValue util; do not render date for null values * fix eventTypes array parsing * fix notification bell event links * Update apps placeholder text * Hide "Edit" button for step when that step is active * fix style override on ant btn disabled state * fix long app form scroll * allow small buffer for long app param labels * no horizontal scrolling * add right margin to user guide link to avoid scrollbar ui conflict

* commit to main * Add useCitationMetrics hook for fetching citation metrics in publications module * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Add MetricsModal to project modals and update Datacite API endpoints * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * add Total Request values to table * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update MetricsModal component * Refactor useCitationMetrics hook and update MetricsModal component * Refactor MetricsModal component and add Total Request values to table * Refactor ProjectPreview module, remove DownloadCitation component * update variable names * format write * Refactor ProjectPreview module, update MetricsModal props * refactor: Add custom error messages to form validation rules * refactor: Update form validation error messages * Remove file from the pull request * refactor: Update form validation error messages * refactor: Update form validation error messages * refactor: Update form validation error messages * Delete client/modules/datafiles/src/projects/modals/MetricsModal.tsx * refactor: Update form validation error messages

* Fix links from DS projects to hazmapper maps * Fix linting issues

* disable move/rename on files with metadata associations * remove logging

* commit to main * Add useCitationMetrics hook for fetching citation metrics in publications module * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Add MetricsModal to project modals and update Datacite API endpoints * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * add Total Request values to table * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update MetricsModal component * Refactor useCitationMetrics hook and update MetricsModal component * Refactor MetricsModal component and add Total Request values to table * Refactor ProjectPreview module, remove DownloadCitation component * update variable names * format write * Refactor ProjectPreview module, update MetricsModal props * Update docker-compose-dev.all.debug.yml * Update docker-compose-dev.all.debug.yml --------- Co-authored-by: Jake Rosenberg <[email protected]>

* Bug/DES-2907: Allow exclusions from allocations at portal level * Fix formatting * Use env for settings

…el if it exists (#1304) * Render job attributes notes.label if it exists * linting * linting

* Add citation download options and metrics to ProjectPreview and PublishedDetailLayout * Refactor Download Citation link in ProjectPreview and PublishedDetailLayout * Refactor useCitationMetrics hook and remove unused error variable * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and update ProjectPreview module and styles * Refactor useCitationMetrics hook and remove MetricsModal from ProjectPreview module * Refactor useCitationMetrics hook and remove unused error variable * Refactor import path for MetricsModal in ProjectCitation and PublishedDetailLayout

…is-v3-redesign

Co-authored-by: Garrett Edmonds <[email protected]>

…file selection modes (#1308) * Regex fix and file selection modes * Lint and formatting fixes

* chore: Refactor RenameModal to handle file extensions correctly * feat: Add step to change metadata in curation directory before publishing

* data depot fixes- dropdown usability and error UI for forms * pipeline display fixes * fixes for Trash button * working downloads for private data * disable downloads from frontera.work

* allow editing of type None; fix guest member input on type Other * enforce URL formatting on referenced data/related works

* chore: Refactor PipelineSelectForPublish component - Add line break for clarity in the process description - Include instructions for submitting a ticket with project number, dataset name(s), and author order * feat: Add line break for clarity in the process description and include instructions for submitting a ticket with project number, dataset name(s), and author order * feat: Add hybrid simulation steps to project type modal * chore: Refactor PipelineSelectForPublish component * Refactor * chore: Refactor DownloadCitation component to include preview option * remove previous ticket files

* chore: Refactor PipelineSelectForPublish component - Add line break for clarity in the process description - Include instructions for submitting a ticket with project number, dataset name(s), and author order * feat: Add line break for clarity in the process description and include instructions for submitting a ticket with project number, dataset name(s), and author order

* feat: DES-2903 add id to app listing headings * feat: DES-2631 cms breadcrumbs - added link state mixin - added link state styles - moved CSS variables - added CSS variables - added CMS breadcrumbs template - included CMS breadcrumbs template - changed DjangoCMS breadcrumb template * fix: DES-2631 font size & distance from nav * fix: DES-2809 lighter 2nd-level breadcrumb text * fix: DES-2809 only add breadcrumbs on app page * feat: DES-2809 load CSS sooner * refactor: DES-2806 no new breadcrumb classes I.e. skin Bootstrap's. * chore: DES-2806 remove outdated vars Added in DES-2806, but then not used after later commits for DES-2806. * fix: DES-2806 incorrect margin ref. thus spacing * fix: DES-2806 font size should match feat/Tapis-v3 * feat: DES-2806 move bs3 breadcrumb style to .css * fix: DES-2806 core-styles update & match workspace * fix: DES-2806 match workspace top padding * feat: DES-2806 improve cms focus ui * fix: DES-2806 match workspace colors * fix: DES-2806 use `.breadcrumb-item` not `li` Bootstrap uses `.breadcrumb-item`. * Revert "fix: DES-2806 use `.breadcrumb-item` not `li`" This reverts commit b58cc96. Bootstrap 4 uses `.breadcrumb-item`, but not Bootstrap 3. * chore(cms): update core-styles breadcrumb * chore(cms): use core-styles breadcrumb at v2.27.0

* show protected data options when changing project type to FR * improve variable naming * formatting * fix prop typing

* feat: Handle DOI not provided in useCitationMetrics * feat: Add cache page decorator to PublicationDetailView and PublicationDataCiteView * feat: Add cache page decorator to PublicationDetailView and PublicationDataCiteView

* Fix typo in curation office hours link * chore: Fix typo in Publish/ Amend/ Version

* Pipeline fixes and Fedora representation for publications * formatting

… modal (#1334) * Add metadata and move/copy/download buttons to preview modal * formatting

* Scope overflow scroll in modal to Tools & Applications * clean up diff

…#1341) * use a single form for both creating and editing categories * set smooth scrolling; remove error dialog when switching edit mode * fix type error

… client (#1322) * DES-2872: AppViews error handling * Add key

* Add uniform padding to HTML app container * add top margin to app HTML

* Job Details Modal * Fix label and remove unnecessary env variables * Fix unit test error * Switch to antd description instead of core's descriptionlist * Filter display items with no data --------- Co-authored-by: Garrett Edmonds <[email protected]> Co-authored-by: Sal Tijerina <[email protected]>

* [SelectModal] Back button and related features * Fix lint error * Disable selection for root if it is first row * Update SelectModal.tsx --------- Co-authored-by: Sal Tijerina <[email protected]>

…1347)

* hover pointer; duration 5s; onClick to job history * only fetch notifications once - subsequent notifications will come through as webhooks

* Refactor form validation rules for project description length * Refactor form validation rules for project description length

…unning (#1351)

… interactive (#1358)

* [Job History] Implement expected functionality of "Reuse Inputs" * Fix build error * Address review comments - shared component, suspense * Fix lint error --------- Co-authored-by: Sal Tijerina <[email protected]>

* fix html app overflow * remove unnecessary css

* log DOIs when published files are downloaded/copied/previewed * re-add logging when entity dropdown is opened

…fields with empty strings (#1364) * DES-3033: Handle hidden parameters and inputs * more consolidion

) * Outputs form files are hidden from interactive job submission, still needs to be hidden from side panel. * Hid Outputs field from Job Submission Summary sidebar. * Refactored to bring app definition in as prop, to prevent accidentally double-loading the app and to make the code more readable. --------- Co-authored-by: Sal Tijerina <[email protected]>

* Disabled menu on preview modal and on listing for hazmapper files * - Disables Copy file option in preview PreviewModal - Adds display of response in preview modal for testing * - Adds functionality to open hazmapper map in hazmapper in PreviewContent - Exports Hazmapper base urls - Handles cancel of preview modal once the hazmapper map opens in new tab * - Adds handleCancel prop to PreviewContent in PreviewModal * - Front end linting * - Fixing merge issues * - Linting * - Addressing error Expected a 'break' statement before 'default' no-fallthrough - Addresses lexical delcaration error in Hazmapper case block * - Linting * - Linting error * - Combines file menu logic in PreviewModal --------- Co-authored-by: Sal Tijerina <[email protected]>

* Adding hideQueue flag for apps to hide the queue selection from users. Should only be used with Compress/Extract for now. * Can now hide queue from job subission summary * As suggested, Queue and Allocation now hide independently of each other, and the fields are hidden from the Summary if the app definition requires it.

* improve error boundaries on projects/pubs * remove logging

* Add user_guide_link to app entry model * Render user_guide_link from app model in app form header, and move app form header to capture html apps * Move Suspense one more level up from Header * Fix element arrangement + clean up unused vars * linting * linting * linting * move user_guide_link to AppListingEntry model; send value to client side; ignore blank entry * minor comment adjustment; capitalize Queue in job detail modal * fix app form vertical scroll * add max_length to charfield --------- Co-authored-by: Sal Tijerina <[email protected]>

This reverts commit fe80f0d.

* chore: Fix MetricsModalBody data display issue * chore: Fix MetricsModalBody data display issue * Revert "update to Usage Breakdown" This reverts commit fe80f0d. * chore: Update MetricsModalBody to display most recent year by default * chore: Update MetricsModalBody to display most recent year by default * chore: Update MetricsModalBody to display most recent year by default * chore: Refactor MetricsModalBody to improve data display and filtering

* Add module and placeholder components * Add missing router/layout * Fix recon portal lint errors

Replace AngularJS recon portal with React #1369

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Replace AngularJS recon portal with React #1369

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