Update chunk size that was left at 2

EBIvariation · Aug 24, 2021 · 5268429 · 5268429
1 parent f44fac1
commit 5268429
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/variant_to_realignment.nf b/variant_to_realignment.nf
@@ -359,7 +359,7 @@ workflow process_split_reads {
     main:
         flank_length = 50
         filter_align_with_secondary = true
-        chunk_size = 2
+        chunk_size = 5000000
         process_split_reads_generic(
             source_vcf, old_genome_fa, old_genome_fa_fai, old_genome_chrom_sizes,
             new_genome_fa, new_genome_fa_fai, flank_length, filter_align_with_secondary,