Order the samples by name

Edinburgh-Genome-Foundry · Jul 5, 2024 · 52bd0f5 · 52bd0f5
1 parent 407c862
commit 52bd0f5
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/epijinn/Bedmethyl.py b/epijinn/Bedmethyl.py
@@ -383,7 +383,8 @@ def read_sample_sheet(
 
     # READ SAMPLES
     sample_df = pandas.read_csv(sample_sheet, header=None)
-    # add columnnames
+    # have them in order for the pdf
+    sample_df.sort_values(by=1, inplace=True)  # column as per sample sheet format
 
     # CREATE ITEMS
     # We allow Sequeduct to specify the projectname as a command parameter as well;