Set up Github Actions and bumpversion

.bumpversion.cfg

@@ -0,0 +1,8 @@
+[bumpversion]
+current_version = 0.2.0
+commit = True
+tag = True
+
+[bumpversion:file:README.md]
+
+[bumpversion:file:epijinn/version.py]

.github/workflows/build.yml

@@ -0,0 +1,24 @@
+name: build
+
+on: [workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ubuntu-20.04
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: Set up Python 3.9.12
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.9.12"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install pytest
+      - name: Test pip installation
+        run: |
+          pip install -e .
+      - name: Test with pytest
+        run: |
+          python -m pytest

README.md

@@ -4,8 +4,8 @@
 
 # EpiJinn
 
-[![Build Status](https://travis-ci.org/Edinburgh-Genome-Foundry/EpiJinn.svg?branch=main)](https://travis-ci.org/Edinburgh-Genome-Foundry/EpiJinn)
-[![Coverage Status](https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/EpiJinn/badge.svg?branch=main)](https://coveralls.io/github/Edinburgh-Genome-Foundry/EpiJinn?branch=main)
+![version](https://img.shields.io/badge/current_version-0.2.0-blue)
+[![build](https://github.com/Edinburgh-Genome-Foundry/EpiJinn/actions/workflows/build.yml/badge.svg)](https://github.com/Edinburgh-Genome-Foundry/EpiJinn/actions/workflows/build.yml)
 
 **Work in progress!**
 

epijinn/version.py

@@ -1 +1 @@
-__version__ = "0.1.1"
+__version__ = "0.2.0"

tests/test_epijinn.py

@@ -32,4 +32,4 @@ def test_annotate_methylation():
     dna = Seq("TGACCCCCCCCTGCTCCCCCAGCACCCCCCCCTCA")
     dna_record = SeqRecord(dna, id="example", annotations={"molecule_type": "dna"})
     dna_annotated = epijinn.annotate_methylation(dna_record)
-    assert len(dna_annotated.features) == 6
+    assert len(dna_annotated.features) == 12