Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

sync to main #141

Merged
merged 97 commits into from
Jul 17, 2024
Merged

sync to main #141

merged 97 commits into from
Jul 17, 2024

Commits on Mar 19, 2024

  1. new search space working with est

    @perib
    perib committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    04886ad View commit details
    Browse the repository at this point in the history

Commits on Mar 20, 2024

  1. edits

    @perib
    perib committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    da1749e View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2024

  1. edits

    @perib
    perib committed Mar 22, 2024
    Configuration menu
    Copy the full SHA
    5b5b222 View commit details
    Browse the repository at this point in the history

Commits on Mar 27, 2024

  1. tutorials fixes

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    a28b62f View commit details
    Browse the repository at this point in the history

  2. edits to tutorials

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    974582c View commit details
    Browse the repository at this point in the history

  3. Merge branch 'EpistasisLab:main' into new_search_space_def

    @perib
    perib authored Mar 27, 2024
    Configuration menu
    Copy the full SHA
    496ad9b View commit details
    Browse the repository at this point in the history

  4. Merge remote-tracking branch 'origin/dev' into new_search_space_def

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    ac0ba9d View commit details
    Browse the repository at this point in the history

  5. edit

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    22fd809 View commit details
    Browse the repository at this point in the history

  6. rng_ to rng

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    68378bc View commit details
    Browse the repository at this point in the history

  7. Merge pull request #122 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Mar 27, 2024
    Configuration menu
    Copy the full SHA
    d5a27cc View commit details
    Browse the repository at this point in the history

  8. graph and tree random length initial pipeline

    @perib
    perib committed Mar 27, 2024
    Configuration menu
    Copy the full SHA
    d806571 View commit details
    Browse the repository at this point in the history

Commits on Mar 29, 2024

  1. flatten pipelines to graph, graphpipe params

    @perib
    perib committed Mar 29, 2024
    Configuration menu
    Copy the full SHA
    3e2a3c4 View commit details
    Browse the repository at this point in the history

Commits on Apr 10, 2024

  1. flatten to graphpipeline, steadystate

    @perib
    perib committed Apr 10, 2024
    Configuration menu
    Copy the full SHA
    59dad61 View commit details
    Browse the repository at this point in the history

Commits on Apr 18, 2024

  1. lots of edits to configuration spaces

    @perib
    perib committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    d2dab4e View commit details
    Browse the repository at this point in the history

  2. edits

    @perib
    perib committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    a66ff10 View commit details
    Browse the repository at this point in the history

  3. edits

    @perib
    perib committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    ca42398 View commit details
    Browse the repository at this point in the history

  4. Merge pull request #123 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Apr 18, 2024
    Configuration menu
    Copy the full SHA
    244e897 View commit details
    Browse the repository at this point in the history

  5. fixes, passing tests

    @perib
    perib committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    a29a95d View commit details
    Browse the repository at this point in the history

  6. Merge pull request #124 from perib/new_search_space_def 

    fixes, passing tests
    @perib
    perib authored Apr 18, 2024
    Configuration menu
    Copy the full SHA
    450a7e5 View commit details
    Browse the repository at this point in the history

  7. more fixes with search spaces - wrapper, make sure all supported modu… 

    …les are included
    @perib
    perib committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    ef42226 View commit details
    Browse the repository at this point in the history

  8. Merge pull request #126 from perib/new_search_space_def 

    more fixes with search spaces - wrapper, make sure all supported modu…
    @perib
    perib authored Apr 18, 2024
    Configuration menu
    Copy the full SHA
    b2a00ed View commit details
    Browse the repository at this point in the history

Commits on Apr 19, 2024

  1. added unique_id, fixed issue where graphpipeline not correctly identi… 

    …fying classifiers/regressors
    @perib
    perib committed Apr 19, 2024
    Configuration menu
    Copy the full SHA
    d61cd29 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #127 from perib/new_search_space_def 

    added unique_id, fixed issue where graphpipeline not correctly identi…
    @perib
    perib authored Apr 19, 2024
    Configuration menu
    Copy the full SHA
    5448a43 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #125 from EpistasisLab/dev 

    Dev
    @jay-m-dev
    jay-m-dev authored Apr 19, 2024
    Configuration menu
    Copy the full SHA
    18652bf View commit details
    Browse the repository at this point in the history

  4. number of nodes on pipelines,gp, recursive + merge graphpipeline node… 

    …s, edit tests to remove some fits
    @perib
    perib committed Apr 19, 2024
    Configuration menu
    Copy the full SHA
    7de26d0 View commit details
    Browse the repository at this point in the history

  5. added GaussianProcessClassifier, test for merge duplicate nodes,

    @perib
    perib committed Apr 19, 2024
    Configuration menu
    Copy the full SHA
    05c9ee5 View commit details
    Browse the repository at this point in the history

  6. Merge pull request #128 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Apr 19, 2024
    Configuration menu
    Copy the full SHA
    1710152 View commit details
    Browse the repository at this point in the history

Commits on Apr 23, 2024

  1. cleanup

    @perib
    perib committed Apr 23, 2024
    Configuration menu
    Copy the full SHA
    3ce0584 View commit details
    Browse the repository at this point in the history

  2. updated dask version dependency

    @perib
    perib committed Apr 23, 2024
    Configuration menu
    Copy the full SHA
    0d63172 View commit details
    Browse the repository at this point in the history

Commits on Apr 24, 2024

  1. complexity objective for more classifiers, added regressors

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    2b44d0e View commit details
    Browse the repository at this point in the history

  2. bug fixes with configs and wrapper params

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    58ef5a3 View commit details
    Browse the repository at this point in the history

  3. tpotclassifier and tpotregressor now use data size for search spaces

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    bee43d2 View commit details
    Browse the repository at this point in the history

  4. typo

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    e17ed2c View commit details
    Browse the repository at this point in the history

  5. typo

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    4578b4f View commit details
    Browse the repository at this point in the history

  6. bump version

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    7a9c535 View commit details
    Browse the repository at this point in the history

  7. update version

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    0c2fffb View commit details
    Browse the repository at this point in the history

  8. Merge pull request #129 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Apr 24, 2024
    Configuration menu
    Copy the full SHA
    bb8a919 View commit details
    Browse the repository at this point in the history

  9. fix num_nodes test, add update checker, setup.py change

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    4fa02cf View commit details
    Browse the repository at this point in the history

  10. update setup.py

    @perib
    perib authored Apr 24, 2024
    Configuration menu
    Copy the full SHA
    743adf3 View commit details
    Browse the repository at this point in the history

  11. param_edits

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    f5f466f View commit details
    Browse the repository at this point in the history

  12. edit space

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    79056bd View commit details
    Browse the repository at this point in the history

  13. optional inner classifiers/regressors

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    80525ce View commit details
    Browse the repository at this point in the history

  14. edit

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    18346fc View commit details
    Browse the repository at this point in the history

  15. edit version

    @perib
    perib committed Apr 24, 2024
    Configuration menu
    Copy the full SHA
    47b7fd0 View commit details
    Browse the repository at this point in the history

  16. Merge pull request #130 from perib/new_search_space_def 

    fix num_nodes test, add update checker, setup.py change
    @perib
    perib authored Apr 24, 2024
    Configuration menu
    Copy the full SHA
    8de41fb View commit details
    Browse the repository at this point in the history

Commits on Apr 25, 2024

  1. edit default space

    @perib
    perib committed Apr 25, 2024
    Configuration menu
    Copy the full SHA
    9b987e0 View commit details
    Browse the repository at this point in the history

Commits on May 3, 2024

  1. bug fixes, fixed unique_id type (non-iterable tuples), fixed graphpip… 

    …eline mutation function
    @perib
    perib committed May 3, 2024
    Configuration menu
    Copy the full SHA
    dbba6ee View commit details
    Browse the repository at this point in the history

Commits on May 4, 2024

  1. make more mutation/cx functions available for gp

    @perib
    perib committed May 4, 2024
    Configuration menu
    Copy the full SHA
    3c6e8d2 View commit details
    Browse the repository at this point in the history

  2. fixed crossover between different node types causing a crash. now dif… 

    …ferent node types return false
    @perib
    perib committed May 4, 2024
    Configuration menu
    Copy the full SHA
    5b8f53f View commit details
    Browse the repository at this point in the history

Commits on May 11, 2024

  1. unions, wrapping classifiers/regressors as transformers, multiple opt… 

    …ions in get_search_space now get flattened to have equal probability.
    @perib
    perib committed May 11, 2024
    Configuration menu
    Copy the full SHA
    9338db7 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2024

  1. functions to convert tpot1 config dicts to tpot2

    @perib
    perib committed May 15, 2024
    Configuration menu
    Copy the full SHA
    4cba717 View commit details
    Browse the repository at this point in the history

  2. small note

    @perib
    perib committed May 15, 2024
    Configuration menu
    Copy the full SHA
    d30c291 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #131 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 15, 2024
    Configuration menu
    Copy the full SHA
    8728fff View commit details
    Browse the repository at this point in the history

  4. bug fix

    @perib
    perib committed May 15, 2024
    Configuration menu
    Copy the full SHA
    1fecad6 View commit details
    Browse the repository at this point in the history

Commits on May 16, 2024

  1. search_space fixes

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    96e60d8 View commit details
    Browse the repository at this point in the history

  2. some bug fixes with configurations

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    0b1aa09 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #132 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 16, 2024
    Configuration menu
    Copy the full SHA
    2a3ee23 View commit details
    Browse the repository at this point in the history

  4. remove hardcoded wrappers that are no longer needed

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    5c634b3 View commit details
    Browse the repository at this point in the history

  5. Merge pull request #133 from perib/new_search_space_def 

    remove hardcoded wrappers that are no longer needed
    @perib
    perib authored May 16, 2024
    Configuration menu
    Copy the full SHA
    ecb4c10 View commit details
    Browse the repository at this point in the history

  6. passed rng to the sp generative functions, updated dynamic union to n… 

    …ot include duplicates
    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    50fc0fe View commit details
    Browse the repository at this point in the history

  7. map elites section functions

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    3602956 View commit details
    Browse the repository at this point in the history

  8. import map elites selectors

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    a007c13 View commit details
    Browse the repository at this point in the history

  9. config updates

    @perib
    perib committed May 16, 2024
    Configuration menu
    Copy the full SHA
    bb94241 View commit details
    Browse the repository at this point in the history

Commits on May 17, 2024

  1. Merge pull request #134 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 17, 2024
    Configuration menu
    Copy the full SHA
    378149f View commit details
    Browse the repository at this point in the history

  2. Update _version.py 

    setup.py was updated with new dependency versions. Republishing to see if this fixes the conda-forge error
    @jay-m-dev
    jay-m-dev authored May 17, 2024
    Configuration menu
    Copy the full SHA
    935328f View commit details
    Browse the repository at this point in the history

  3. Merge pull request #135 from EpistasisLab/jay-m-dev-patch-1 

    Update _version.py
    @jay-m-dev
    jay-m-dev authored May 17, 2024
    Configuration menu
    Copy the full SHA
    d4102ec View commit details
    Browse the repository at this point in the history

  4. gradientboosting invalid crossover parser fix

    @perib
    perib committed May 17, 2024
    Configuration menu
    Copy the full SHA
    445428c View commit details
    Browse the repository at this point in the history

  5. one hot encoder no longer throws error by default on unknown categories

    @perib
    perib committed May 17, 2024
    Configuration menu
    Copy the full SHA
    53c1019 View commit details
    Browse the repository at this point in the history

Commits on May 18, 2024

  1. addded kbins dsitrcretizer with passthrough

    @perib
    perib committed May 18, 2024
    Configuration menu
    Copy the full SHA
    981d9d4 View commit details
    Browse the repository at this point in the history

  2. make sure genetic feature selection always selects at least one column

    @perib
    perib committed May 18, 2024
    Configuration menu
    Copy the full SHA
    ec9c3bb View commit details
    Browse the repository at this point in the history

  3. dyanmic_linear_fix

    @perib
    perib committed May 18, 2024
    Configuration menu
    Copy the full SHA
    ac79ed3 View commit details
    Browse the repository at this point in the history

Commits on May 20, 2024

  1. fix bugs

    @perib
    perib committed May 20, 2024
    Configuration menu
    Copy the full SHA
    db0b132 View commit details
    Browse the repository at this point in the history

Commits on May 23, 2024

  1. catch dask error when closing, validation strategy now puts errors in… 

    … the correct column and prevents a crash, base evolver can now terminate mid generation when max_time_seconds is reached,
    @perib
    perib committed May 23, 2024
    Configuration menu
    Copy the full SHA
    8056594 View commit details
    Browse the repository at this point in the history

Commits on May 24, 2024

  1. Merge pull request #136 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 24, 2024
    Configuration menu
    Copy the full SHA
    fedc90d View commit details
    Browse the repository at this point in the history

Commits on Jun 7, 2024

  1. removed a cx function in union pipeline so that we don't unintentiona… 

    …lly duplicate search spaces
    @perib
    perib committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    50d3eb2 View commit details
    Browse the repository at this point in the history

  2. added skip

    @perib
    perib committed Jun 7, 2024
    Configuration menu
    Copy the full SHA
    326aae8 View commit details
    Browse the repository at this point in the history

Commits on Jun 14, 2024

  1. imputer

    @perib
    perib committed Jun 14, 2024
    Configuration menu
    Copy the full SHA
    e69e8aa View commit details
    Browse the repository at this point in the history

  2. added memory to sequential

    @perib
    perib committed Jun 14, 2024
    Configuration menu
    Copy the full SHA
    5425ee4 View commit details
    Browse the repository at this point in the history

Commits on Jun 19, 2024

  1. Merge pull request #137 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Jun 19, 2024
    Configuration menu
    Copy the full SHA
    bbef3e4 View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2024

  1. estimator with default search spaces. linear new default

    @perib
    perib committed Jun 29, 2024
    Configuration menu
    Copy the full SHA
    64cfc2d View commit details
    Browse the repository at this point in the history

  2. tutorials fixes

    @perib
    perib committed Jun 29, 2024
    Configuration menu
    Copy the full SHA
    9e7cef4 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #138 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Jun 29, 2024
    Configuration menu
    Copy the full SHA
    a1592e6 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2024

  1. removed unused files, passed rng into default_rng

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    102cdd5 View commit details
    Browse the repository at this point in the history

  2. wrapper now crossover over hyperparametesr

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    2b59ec8 View commit details
    Browse the repository at this point in the history

  3. made naming clearer

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    1b63414 View commit details
    Browse the repository at this point in the history

  4. wrapper for crossover functions so that subclasses can use crossover … 

    …instead of _crossover
    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    e388651 View commit details
    Browse the repository at this point in the history

  5. tpot estimator documentation edit

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    a250ed2 View commit details
    Browse the repository at this point in the history

  6. update documentation

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    6905e6f View commit details
    Browse the repository at this point in the history

  7. fixed imputation tutorial

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    f7b4b27 View commit details
    Browse the repository at this point in the history

  8. fix

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    76f76fa View commit details
    Browse the repository at this point in the history

  9. wrap fix

    @perib
    perib committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    334ca58 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2024

  1. added check for infinite max_eval_time_seconds

    @perib
    perib committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    8c0379c View commit details
    Browse the repository at this point in the history

  2. Print out package versions and make tests verbose

    @jay-m-dev
    jay-m-dev committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    dc1fb8a View commit details
    Browse the repository at this point in the history

  3. Pin numpy version

    @jay-m-dev
    jay-m-dev committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    76d3989 View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2024

  1. Merge pull request #139 from perib/new_search_space_def 

    New search space def
    @jay-m-dev
    jay-m-dev authored Jul 11, 2024
    Configuration menu
    Copy the full SHA
    93e709a View commit details
    Browse the repository at this point in the history

  2. Resolve version conflicts and test conflicts

    @jay-m-dev
    jay-m-dev committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    65b6760 View commit details
    Browse the repository at this point in the history

  3. Merge pull request #140 from EpistasisLab/search_space_api 

    Search space api
    @jay-m-dev
    jay-m-dev authored Jul 11, 2024
    Configuration menu
    Copy the full SHA
    908eeca View commit details
    Browse the repository at this point in the history