Release ExploreASL v1.11.0 · ExploreASL/ExploreASL

ExploreASL v1.11.0

Versions included & used third-party tools (see /External/README_SPM.txt):

Release issue #1423: New release.
Features #1002, #1214, #1301, #1341, #1387, #1447, #1458, #1469, #1471: Multi-PLD quantification with BASIL and FABBER.
Features #1128, #1300, #1367: Allow direct import of NIfTIs.
Features #1311, #1348, #1419: Use Matlab functions instead of SPM for I/O of JSON files.
Features #1396, #1408, #1411, #1449, #1468: Multi-TE time-encoded DEBBIE sequence quantification.

Bugs #577, #684, #1330, #1424, #1431: Fix issue with subject number in population filenames and allow sessions 10 and higher.
Bug #1062: Fix TotalAcquiredPairs calculation with dummy scans for M0 splitting.
Bug #1178: Fix symbol interpretation in longitudinal registration.
Bug #1287: Fixed site-biasfield correction for more than 3 sites.
Bugs #1288, #1290, #1308, #1318, #1393, #1405, #1435: Correct import of DCM2BIDS and BIDS2Legacy with duplicate anatomical scans, missing scans, improve message formatting.
Bugs #1294, #1331, #1392, #1444: Fix import of GE and Siemens scans.
Bug #1295: Save temporary CSV with WMH counts to subject folder and not population folder.
Bug #1327: Fix WM maps conversion to native space.
Bug #1338, #1453: Fix an incorrect path and crashes for NonCommercial atlases for CAT12.
Bug #1361: if a single subject crashes the bids2legacy conversion, this won't crash other subjects anymore.
Bug #1376: Fix bug xASL_bids_Add2ParticipantsTSV.
Bug #1415: Correct import of PE-polar directions for M0.
Bug #1481: Provide default T1-blood when hematocrit values are missing.

Issue #1120: Save motion parameters before and after spike removal.
Issues #1320, #1334: Avoid additional zipping of BIDS and Legacy data after import.
Issues #1270, #1326, #1356: Flavor-import testing allows to turn of certain dataset and other optimizations.
Issue #1375: Add an option for absolute threshold on motion spike removal.
Issues #1388, #1397: Optimizing token use in import in sourcestructure.json.

Issues #57, #89, #121, #222, #224, #229, #328, #413, #473, #507, #533, #541, #561, #751, #984, #991, #1018, #1034, #1048, #1052, #1057, #1072, #1158, #1181, #1194, #1208, #1209, #1230, #1268, #1299, #1344, #1402, #1417, #1455: Duplicit and review issues.
Issues #508, #1171, #1437: Fix Singularity and Docker deployment.
Issues #989, #1204, #1239: Add multi-PLD Siemens XA31 flavor.
Issues #1247, #1477, #1484: Standardized Testing Script Results with proper results saving.
Issues #1315, #1428: Add SequenceName tag to DCMTK reader.
Issues #1319, #1366: Add Philips Look-Locker flavor.
Issue #1324: Make ExploreASL and related code work on Apple Silicon.
Issues #1362, #1407, #1451: Add Siemens multi-TE time-encoded DEBBIE flavor.
Issue #1372: Add Matlab version check to the ExploreASL start-up
Issue #1395: Calculate Siemens labeling duration from NumRFBlocks.