NEKO v0.8.0 #201
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| name: CI | |
| # Controls when the action will run. | |
| on: | |
| pull_request: | |
| branches: [master] | |
| workflow_dispatch: | |
| jobs: | |
| linting: | |
| name: "Flint" | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -yq python3-dev python3-pip python3-tk | |
| pip install nobvisual==0.2.0 flinter==0.4.0 | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Lint | |
| run: | | |
| flint score src/ -d 10 -r flinter_rc.yml | tee flint.txt | |
| score=$(awk '$1==0{print $3}' flint.txt) | |
| if (( $(echo "$score < 8.02" |bc -l) )) ; then | |
| exit 1 | |
| fi | |
| - name: Archive linter report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: flint-report | |
| path: flint.txt | |
| retention-days: 5 | |
| GNU: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-20.04, macos-13] | |
| compiler: [gfortran-10, gfortran-11, gfortran-12] | |
| backend: [cpu, cuda, hip, opencl] | |
| precision: [sp, dp] | |
| exclude: | |
| - os: ubuntu-20.04 | |
| compiler: gfortran-11 | |
| - os: ubuntu-20.04 | |
| compiler: gfortran-12 | |
| - os: ubuntu-20.04 | |
| backend: opencl | |
| - os: macos-13 | |
| compiler: gfortran-10 | |
| - os: macos-13 | |
| backend: cuda | |
| - os: macos-13 | |
| backend: hip | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: | | |
| sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 cmake-curses-gui | |
| - os: macos-13 | |
| setup-env: export HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK=1 && brew install openmpi && brew install automake && brew install gcc@11 && brew install gcc@12 | |
| env: | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler }} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache pFUnit | |
| id: cache-pfunit | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/pfunit | |
| key: pfunit-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Build pFUnit | |
| if: ${{ (steps.cache-pfunit.outputs.cache-hit != 'true') && (matrix.backend == 'cpu') }} | |
| run: | | |
| git clone --depth 1 https://github.com/Goddard-Fortran-Ecosystem/pFUnit.git -b v4.4.2 | |
| cd pFUnit | |
| cat >> pfunit_error_stop.patch << _ACEOF | |
| diff --git a/src/funit/FUnit.F90 b/src/funit/FUnit.F90 | |
| index 7df7b65..4f7dbf5 100644 | |
| --- a/src/funit/FUnit.F90 | |
| +++ b/src/funit/FUnit.F90 | |
| @@ -168,7 +168,7 @@ contains | |
| #if defined(PGI) | |
| call exit(-1) | |
| #else | |
| - stop '*** Encountered 1 or more failures/errors during testing. ***' | |
| + error stop '*** Encountered 1 or more failures/errors during testing. ***' | |
| #endif | |
| end if | |
| _ACEOF | |
| git apply pfunit_error_stop.patch && mkdir b && cd b | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/pfunit .. | |
| make -j$(nproc) && make install && cd ../../ | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| rm -f ${HOME}/pkg/json-fortran/lib/*.dylib | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| echo $PKG_CONFIG_PATH | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --with-pfunit=${HOME}/pkg/pfunit/PFUNIT-4.4 --enable-real=${RP} | |
| make -j$(nproc) | |
| - name: Build (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| sudo apt-get install -y nvidia-cuda-toolkit | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-cuda=/usr | |
| make -j$(nproc) | |
| - name: Build (HIP backend) | |
| if: matrix.backend == 'HIP' | |
| run: | | |
| wget -q -O - https://repo.radeon.com/rocm/rocm.gpg.key | sudo apt-key add - | |
| echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/debian/ ubuntu main' | sudo tee /etc/apt/sources.list.d/rocm.list | |
| sudo apt-get update && sudo apt-get install -y rocm-dev | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" HIP_HIPCC_FLAGS="-O2 -fPIE" --enable-real=${RP} --with-hip=/opt/rocm-6.1.0 | |
| make -j$(nproc) | |
| - name: Build (OpenCL backend) | |
| if: matrix.backend == 'opencl' | |
| run: | | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-opencl | |
| make -j$(nproc) | |
| - name: Check | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| ls ${HOME}/pkg/json-fortran/lib/ | |
| make -j$(nproc) check | |
| - name: Archive test report | |
| if: matrix.backend == 'cpu' && failure() | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Test report_${{ matrix.os }}_${{ matrix.compiler }} | |
| path: tests/test-suite.log | |
| retention-days: 2 | |
| - name: Dist (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} | |
| make -j $(nproc) | |
| - name: Dist (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} --with-cuda=/usr | |
| make -j $(nproc) | |
| - name: Dist (HIP backend) | |
| if: matrix.backend == 'hip' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} FCFLAGS="-fPIE" --enable-real=${RP} HIP_HIPCC_FLAGS="-O2 -fPIE" --with-hip=/opt/rocm-6.1.0 | |
| make -j $(nproc) | |
| - name: Dist (OpenCL backend) | |
| if: matrix.backend == 'opencl' | |
| run: | | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| ./configure FC=${FC} --enable-real=${RP} --with-opencl | |
| make -j $(nproc) | |
| Intel: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04] | |
| compiler: [ifort, ifx] | |
| precision: [sp, dp] | |
| backend: [cpu] | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: | | |
| wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null && echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list && sudo apt-get update -y && sudo apt install -y --no-install-recommends intel-oneapi-compiler-fortran intel-oneapi-mpi intel-oneapi-mpi-devel intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| source /opt/intel/oneapi/setvars.sh | |
| sudo apt install -y autoconf automake autotools-dev libopenblas-dev make git m4 python3 ca-certificates cmake | |
| export PATH=/opt/intel/oneapi/compiler/2024.1/bin:${PATH} | |
| printenv >> $GITHUB_ENV | |
| env: | |
| CC: icc | |
| FC: ${{ matrix.compiler }} | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| env FC=${FC} cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build | |
| run: | | |
| echo $PKG_CONFIG_PATH | |
| ./regen.sh | |
| ./configure FC=${FC} CC=${CC} MPIFC"=mpiifort -fc=${FC}" --enable-real=${RP} | |
| make FCFLAGS="-O2 -stand f08 -warn errors `pkg-config --cflags json-fortran`" -j$(nproc) | |
| NVIDIA: | |
| needs: linting | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-20.04] | |
| compiler: [nvfortran] | |
| backend: [cpu, cuda] | |
| precision: [dp] | |
| include: | |
| - os: ubuntu-20.04 | |
| setup-env: sudo apt-get update && sudo apt-get install -y autoconf automake autotools-dev make git m4 libopenblas-dev && curl https://developer.download.nvidia.com/hpc-sdk/ubuntu/DEB-GPG-KEY-NVIDIA-HPC-SDK | sudo gpg --dearmor -o /usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg && echo 'deb [signed-by=/usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' | sudo tee /etc/apt/sources.list.d/nvhpc.list && sudo apt-get update -y && sudo apt-get install -y nvhpc-24-3 && NVARCH=`uname -s`_`uname -m`; export NVARCH && NVCOMPILERS=/opt/nvidia/hpc_sdk; export NVCOMPILERS && PATH=$NVCOMPILERS/$NVARCH/24.3/compilers/bin:$PATH; export PATH && export PATH=$NVCOMPILERS/$NVARCH/24.3/comm_libs/mpi/bin:$PATH && printenv >> $GITHUB_ENV | |
| env: | |
| CC: gcc | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler }} | |
| OMPI_CC: gcc | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: ${{ matrix.setup-env }} | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Build (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| git apply patches/nvhpc_bge.patch | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} | |
| make | |
| - name: Build (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| git apply patches/nvhpc_bge.patch | |
| ./regen.sh | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.3/cuda/ | |
| make | |
| - name: Dist (CPU backend) | |
| if: matrix.backend == 'cpu' | |
| run: | | |
| git stash | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| patch -u src/common/signal.f90 -i patches/nvhpc_bge.patch | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} | |
| make -j $(nproc) | |
| - name: Dist (CUDA backend) | |
| if: matrix.backend == 'cuda' | |
| run: | | |
| git stash | |
| make dist | |
| mkdir releng | |
| tar xf neko-*.tar.gz -C releng | |
| cd releng/neko-* | |
| patch -u src/common/signal.f90 -i patches/nvhpc_bge.patch | |
| ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.3/cuda/ | |
| make -j $(nproc) | |
| ReFrame: | |
| needs: GNU | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| precision: [sp, dp] | |
| compiler: [gfortran-10] | |
| env: | |
| FC: ${{ matrix.compiler }} | |
| OMPI_FC: ${{ matrix.compiler}} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none | |
| RP: ${{ matrix.precision }} | |
| name: ReFrame / ${{ matrix.compiler}} / ${{ matrix.precision }} | |
| steps: | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 | |
| pip install reframe-hpc | |
| - name: Cache json-fortran | |
| id: cache-json-fortran | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/pkg/json-fortran | |
| key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }} | |
| - name: Install json-fortran | |
| if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }} | |
| run: | | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc | |
| - name: Setup json-fortran | |
| run: | | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Topology | |
| run: | | |
| reframe --detect-host-topology | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Regression tests | |
| run: | | |
| ./regen.sh | |
| cd reframe | |
| env NEKO_REAL=${RP} NEKO_SCHEME=pnpn reframe -v -C settings.py -c checks.py -n MiniHemi -n MiniTgv8 -n MiniRB -r --performance-report --system github-actions:cpu | |
| documentation: | |
| needs: [Intel, GNU, NVIDIA, ReFrame] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup env. | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y git openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 doxygen fonts-freefont-ttf graphviz | |
| git clone https://github.com/ExtremeFLOW/doxygen-awesome-css doc/doxygen-awesome-css | |
| git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/ | |
| cd json-fortran | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON .. | |
| make -j$(nproc) && make install && cd ../../ | |
| echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV | |
| echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV | |
| - name: Doxygen | |
| run: | | |
| ./regen.sh | |
| ./configure FC=${FC} | |
| make html | |
| # Deploy the HTML documentation to GitHub Pages | |
| - name: GH Pages Deployment | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./doc/html/ | |
| allow_empty_commit: false | |
| force_orphan: false | |
| publish_branch: gh-pages | |
| destination_dir: docs/release | |
| keep_files: false | |
| enable_jekyll: true |