C-PAC Templates

In addition to the templates provided by Neuroparc, C-PAC includes the templates here. This repository is modeled after Neuroparc v1.0.

In the package ghcr.io/fcp-indi/c-pac_templates, all templates are stored in a flat structure in the directory /cpac_templates.

• Atlas Spec
• Tables
  • Human
  • Macaque
  • Mouse

Atlas Info Summary

Human

Atlas Name	# Regions	Symmetrical?	Hierarchical?	Labelled?	Generation Method	Average Vol/Region	Native coordinate space	Description	Reference Publication	Year of Origin	File Source/Download URL	License
AAL
ABIDE
CC
CSF
EZ
HarvardOxford
ROIs
Schaefer	200 300 400 1000										https://github.com/ThomasYeoLab/CBIG/tree/v0.22.6-Edit_KRR_LITE_to_only_allow_for_corr_kernel/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI	MIT
Smith	10							10 well-matched maps from […] 200-dimensional ICA, Resting-FMRI components […] as shown in PNAS paper	doi:10.1073/pnas.0905267106	2009	https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/ https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/PNAS_Smith09_rsn10.nii.gz
Smith desc-thresh3	10				scripts/threshold_mask.py			Smith (above) thresholded at Z = 3 as in Fig 1	doi:10.1073/pnas.0905267106	2009
Talairach–Tournoux

Macaque

Atlas Name	# Regions	Symmetrical?	Hierarchical?	Labelled?	Generation Method	Average Vol/Region	Native coordinate space	Description	Reference Publication	Year of Origin	File Source/Download URL
J_Macaque_11mo_atlas_nACQ							194x252x160			2020	https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates
MacaqueYerkes19										2020	https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates

Mouse

Atlas Name	# Regions	Symmetrical?	Hierarchical?	Labelled?	Generation Method	Average Vol/Region	Native coordinate space	Description	Reference Publication	Year of Origin	File Source/Download URL
CHD8		No	No		drawn by hand on a BOLD EPI template of one study carried out some time ago at Istituto Italiano di Tecnologia				doi:10.1038/s41467-021-26131-z	2021

Technical note about this repository

This repository uses Git Large File Service. You need git lfs to work with this repository directly. If you're just using the templates as containerized, git lfs is not necessary.