⬇️ Keep nitransforms <24.0.0

Ref nipy/nitransforms#203 (comment)
FCP-INDI · Sep 6, 2024 · d639215 · d639215
1 parent 9ff08f8
commit d639215
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diff --git a/.github/Dockerfiles/c-pac_api.latest.Dockerfile b/.github/Dockerfiles/c-pac_api.latest.Dockerfile
@@ -14,10 +14,10 @@
 
 # You should have received a copy of the GNU Lesser General Public
 # License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
-FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free as src
-LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A DRY-RUN TESTING IMAGE \
+FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free AS src
+LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A DRY-RUN TESTING IMAGE \
 Dry-run C-PAC latest API."
-LABEL org.opencontainers.image.source https://github.com/FCP-INDI/cpac
+LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/cpac
 USER root
 COPY --from=fcpindi/c-pac:latest /code /code
 RUN mkdir -p /home/user/c-pac_user \
@@ -29,10 +29,10 @@ RUN mkdir -p /home/user/c-pac_user \
        python3.10 \
        python-is-python3 \
     && rm -rf /var/lib/apt/lists/*
-ENV PYTHONUSERBASE=/home/c-pac_user/.local
-ENV PATH=$PATH:/home/c-pac_user/.local/bin \
+ENV PYTHONUSERBASE=/home/user/c-pac_user/.local
+ENV PATH=$PATH:/home/user/c-pac_user/.local/bin \
     PYTHONPATH=$PYTHONPATH:$PYTHONUSERBASE/lib/python3.10/site-packages
 USER c-pac_user
-RUN pip install -r /code/requirements.txt && pip install --user /code
+RUN pip install "nitransforms>=21.0.0,<24.0.0" && pip install -r /code/requirements.txt && pip install --user /code
 ENV FSLDIR="/FSLDIR"
 ENTRYPOINT [ "/code/run.py" ]
diff --git a/.github/Dockerfiles/c-pac_api.nightly.Dockerfile b/.github/Dockerfiles/c-pac_api.nightly.Dockerfile
@@ -14,10 +14,10 @@
 
 # You should have received a copy of the GNU Lesser General Public
 # License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
-FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free as src
-LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A DRY-RUN TESTING IMAGE \
+FROM ghcr.io/fcp-indi/c-pac/ubuntu:jammy-non-free AS src
+LABEL org.opencontainers.image.description="NOT INTENDED FOR USE OTHER THAN AS A DRY-RUN TESTING IMAGE \
 Dry-run C-PAC nightly API."
-LABEL org.opencontainers.image.source https://github.com/FCP-INDI/cpac
+LABEL org.opencontainers.image.source=https://github.com/FCP-INDI/cpac
 USER root
 COPY --from=fcpindi/c-pac:nightly /code /code
 RUN mkdir -p /home/user/c-pac_user \
@@ -33,6 +33,6 @@ ENV PYTHONUSERBASE=/home/c-pac_user/.local
 ENV PATH=$PATH:/home/c-pac_user/.local/bin \
     PYTHONPATH=$PYTHONPATH:$PYTHONUSERBASE/lib/python3.10/site-packages
 USER c-pac_user
-RUN pip install -r /code/requirements.txt && pip install --user /code
+RUN pip install "nitransforms>=21.0.0,<24.0.0" && pip install -r /code/requirements.txt && pip install --user /code
 ENV FSLDIR="/FSLDIR"
 ENTRYPOINT [ "/code/CPAC/_entrypoints/run.py" ]
diff --git a/README.rst b/README.rst
@@ -58,7 +58,7 @@ Usage
     	cpac -B /path/to/data/configs:/configs \
     		--image fcpindi/c-pac --tag latest \
     		run /path/to/data /path/for/outputs \
-    		--data_config_file /configs/data_config.yml \
+    		--data_config_file /configs/data_config.yaml \
     		--save_working_dir
 
     Each command can take "--help" to provide additonal usage information, e.g.,
@@ -88,7 +88,7 @@ Usage
         gradients           Run ba_timeseries_gradients. See
                             "cpac [--platform "{docker,singularity}] gradients --help"
                             for more information.
-        tsconcat            Run ba-tsconcat (*)
+        tsconcat            Run ba-tsconcat (<0.2.0,>=0.1.2)
         pull (upgrade)      Upgrade your local C-PAC version to the latest version
                             by pulling from Docker Hub or other repository.
                             Use with "--image" and/or "--tag" to specify an image