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Cube v6 support

Cube v6 support #109

Workflow file for this run

name: CI
on:
push:
branches: [ master ]
tags:
- "v?[0-9]+.[0-9]+.[0-9]+*"
paths:
- '.github/**'
- '**.rs'
- 'Cargo.*'
- 'docker-compose.yml'
pull_request:
branches: [ master ]
env:
CARGO_TERM_COLOR: always
jobs:
test:
name: Test
runs-on: ubuntu-24.04
steps:
- uses: actions/checkout@v4
- name: Start services
run: docker compose up -d
- name: Download example data
run: docker compose run --rm get-data
- name: Cache rust build
uses: Swatinem/rust-cache@v2
- name: Install cargo-llvm-cov
uses: taiki-e/install-action@cargo-llvm-cov
- name: Run tests
env:
RUST_LOG: oxidicom=debug,integration_test=debug
run: cargo llvm-cov test --locked --codecov --output-path codecov.json
- name: Print service logs
if: failure()
run: docker compose logs
- name: Upload coverage to Codecov
if: always()
uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: codecov.json
fail_ci_if_error: true
build-rust:
name: Build Rust binary
runs-on: ubuntu-24.04
needs: [ test ]
strategy:
matrix:
target:
- aarch64-unknown-linux-musl
- x86_64-unknown-linux-musl
steps:
- uses: actions/checkout@v4
- name: Cache rust build
uses: Swatinem/rust-cache@v2
- name: Build
uses: houseabsolute/actions-rust-cross@ad283b2fc65ad1f3a04fb8bf8b2b829aad4a9318
with:
target: ${{ matrix.target }}
command: build
args: --release --locked
- name: Move binary
run: |
mkdir dist
mv target/${{ matrix.target }}/release/oxidicom dist/oxidicom
- name: Calculate checksum
run: |
cd dist
sha256 oxidicom | tee oxidicom.sha256sum
- name: Upload artifacts
uses: actions/upload-artifact@v4
with:
name: 'build__${{ matrix.target }}'
path: dist
if-no-files-found: 'error'
build-docker:
name: Build container image
runs-on: ubuntu-24.04
needs: [ build-rust ]
steps:
- name: Download x86_64 binary
uses: actions/download-artifact@v4
- name: Print out all files
run: find -type f
- name: Print expected checksums
run: find -type f -name '*.sha256sum' -exec sh -c 'echo {} && cat {}' \;
- name: Calculate actual checksums
run: find -type f -name 'oxidicom' -exec sha256sum '{}' \;
- name: Move binaries and mark executable
run: |
mkdir -vp dist/linux/amd64 dist/linux/arm64
mv -v build__x86_64-unknown-linux-musl/oxidicom dist/linux/amd64/oxidicom
mv -v build__aarch64-unknown-linux-musl/oxidicom dist/linux/arm64/oxidicom
chmod -v 555 dist/linux/{amd64,arm64}/oxidicom
- name: Create Dockerfile
run: |
cat > Dockerfile << EOF
# syntax=docker/dockerfile:1
FROM scratch
ARG TARGETPLATFORM
COPY ./dist/\$TARGETPLATFORM/oxidicom /oxidicom
CMD ["/oxidicom"]
EOF
- uses: docker/metadata-action@v5
id: meta
with:
images: |
docker.io/fnndsc/oxidicom
ghcr.io/fnndsc/oxidicom
tags: |
type=ref,event=branch
type=ref,event=pr
type=semver,pattern={{version}}
type=semver,pattern={{major}}.{{minor}}
type=raw,value=latest,enable={{is_default_branch}}
- uses: docker/setup-qemu-action@v3
- uses: docker/setup-buildx-action@v3
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{ secrets.DOCKERHUB_USERNAME }}
password: ${{ secrets.DOCKERHUB_PASSWORD }}
- name: Login to GitHub Container Registry
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.repository_owner }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Build and push
uses: docker/build-push-action@v6
with:
context: .
push: true
file: ./Dockerfile
platforms: linux/amd64,linux/arm64
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
cache-from: type=gha
cache-to: type=gha,mode=max
# Re-reun tests many times to detect race conditions.
# https://github.com/FNNDSC/oxidicom/issues/4
retest:
name: Rerun tests many times
runs-on: ubuntu-24.04
steps:
- uses: actions/checkout@v4
- name: Start services
run: docker compose up -d
- name: Download example data
run: docker compose run --rm get-data
- name: Cache rust build
uses: Swatinem/rust-cache@v2
- name: Compile test binary
run: cargo test --no-run --locked
- name: Run tests
env:
RUST_LOG: oxidicom::notifier=trace,oxidicom::limiter=trace,integration_test=trace
run: |
set +e
failed_count=0
mkdir logs
for i in {1..20}; do
cargo test > log
rc=$?
echo "Attempt #$i --> $rc"
if [ "$rc" != '0' ]; then
((failed_count++))
mv log logs/$(date +%s).log
fi
done
if [ "$failed_count" != 0 ]; then
cat logs/*.log
echo "::error ::$failed_count out of 20 attempts failed."
exit 1
fi