Test data for nf core summary

File Name:	Description:	Made from:	Using:	Needed for:
test_test2_paired_mutect2_calls.vcf.gz	Output vcf of mutect2 tumor_normal mode	nf-core : test + test2 recal bams	mutect2	filtermutectcalls
test_test2_paired_mutect2_calls.vcf.gz.tbi	Index for vcf t/n	nf-core : test + test2 recal bams	mutect2	filtermutectcalls
test_test2_paired_mutect2_calls.f1r2.tar.gz	Output table from mutect2 tumor_normal mode	nf-core : test + test2 recal bams	mutect2	learnreadorientationmodel
test_test2_paired_mutect2_calls.vcf.gz.stats	Output stats table from mutect2 tumor_normal mode	nf-core : test + test2 recal bams	mutect2	filtermutectcalls
test2.pileups.table	Summarises tumor allele counts	nf-core : test2 recal bam	GetPileupSummaries	calculatecontamination
test.pileups.table	Summarises normal allele counts	nf-core : test recal bam	GetPileupSummaries	calculatecontamination
test_test2_paired_mutect2_calls.artifact-prior.tar.gz	Table of artifact priors	test_test2_paired_mutect2_calls.f1r2.tar.gz	learnreadorientationmodel	filtermutectcalls
test_test2_paired.contamination.table	Table of contamination estimates	test + test2 pileups	CalculateContamination	filtermutectcalls
test_test2_paired.segmentation.table	Table of tumor segmentations	test + test2 pileups	CalculateContamination	filtermutectcalls
test_genomicsdb	Genomicsdb workspace (directory)	nf-core : test.genome.vcf	genomicsdbimport	genomicsdbimport, createsompon