Make clicking on introns in gene glyph select the mRNA #716
Workflow file for this run
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name: Pull Request | |
on: pull_request | |
jobs: | |
build: | |
name: Strict lint and test | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out | |
uses: actions/checkout@v4 | |
- name: Use Node.js 18.x | |
uses: actions/setup-node@v4 | |
with: | |
node-version: 18 | |
cache: yarn | |
- name: Install | |
run: yarn --immutable | |
# Have to build shared before linting so type-based lint rules can | |
# run correctly | |
- name: Build shared | |
run: yarn build | |
working-directory: packages/apollo-shared | |
- name: Lint codebase | |
run: | |
yarn eslint --report-unused-disable-directives --max-warnings 0 --ext | |
.js,.ts,.jsx,.tsx . | |
- name: Run Jest tests | |
run: yarn test | |
- name: Get latest JBrowse | |
run: yarn run jbrowse create --nightly .jbrowse | |
working-directory: packages/jbrowse-plugin-apollo | |
- name: Start MongoDB | |
uses: supercharge/[email protected] | |
with: | |
mongodb-version: 7 | |
mongodb-replica-set: test-rs | |
- name: Run Cypress tests | |
run: yarn run test:e2e | |
working-directory: packages/jbrowse-plugin-apollo | |
- name: Start apollo | |
run: | | |
yarn --cwd packages/apollo-shared start & | |
ALLOW_ROOT_USER=true ROOT_USER_NAME=admin ROOT_USER_PASSWORD=pass yarn --cwd packages/apollo-collaboration-server start & | |
- name: Run CLI tests | |
run: python3 ./test/test.py TestCLI | |
working-directory: packages/apollo-cli | |
# - name: Run docker tests | |
# working-directory: packages/apollo-cli | |
# run: python3 ./test/test_docker.py | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} |