Draw background on genes #722
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Pull Request | |
on: pull_request | |
jobs: | |
build: | |
name: Strict lint and test | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out | |
uses: actions/checkout@v4 | |
- name: Use Node.js 18.x | |
uses: actions/setup-node@v4 | |
with: | |
node-version: 18 | |
cache: yarn | |
- name: Install | |
run: yarn --immutable | |
# Have to build shared before linting so type-based lint rules can | |
# run correctly | |
- name: Build shared | |
run: yarn build | |
working-directory: packages/apollo-shared | |
- name: Lint codebase | |
run: | |
yarn eslint --report-unused-disable-directives --max-warnings 0 --ext | |
.js,.ts,.jsx,.tsx . | |
- name: Run Jest tests | |
run: yarn test | |
- name: Get latest JBrowse | |
run: yarn run jbrowse create --nightly .jbrowse | |
working-directory: packages/jbrowse-plugin-apollo | |
- name: Start MongoDB | |
uses: supercharge/[email protected] | |
with: | |
mongodb-version: 7 | |
mongodb-replica-set: test-rs | |
- name: Run Cypress tests | |
run: yarn run test:e2e | |
working-directory: packages/jbrowse-plugin-apollo | |
- name: Start apollo | |
run: | | |
yarn --cwd packages/apollo-shared start & | |
ALLOW_ROOT_USER=true ROOT_USER_NAME=admin ROOT_USER_PASSWORD=pass yarn --cwd packages/apollo-collaboration-server start & | |
- name: Run CLI tests | |
run: python3 ./test/test.py TestCLI | |
working-directory: packages/apollo-cli | |
# - name: Run docker tests | |
# working-directory: packages/apollo-cli | |
# run: python3 ./test/test_docker.py | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} |