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{{$NEXT}} | ||
# Release 1.16.11 2021-03-11 23:10:58 UTC | ||
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## Minor improvements | ||
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--- | ||
layout: post | ||
title: JBrowse 1.16.11 maintenance release | ||
date: 2021-03-11 | ||
tags: ["News","Software releases"] | ||
--- | ||
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Hi all, | ||
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This is a small maintanence release that fixes an issue that was seen with very | ||
long CRAM reads and an issue that was seen with some users installing with | ||
setup.sh producing an error. Thanks to everyone for their bug reports and | ||
requests and for being patient with jbrowse 1 releases as we speed ahead with | ||
jbrowse 2! | ||
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* [JBrowse-1.16.11.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11.zip) - minified release | ||
* [JBrowse-1.16.11-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.11-release.zip) - use this if you modify jbrowse source code or use plugins | ||
* [JBrowse-1.16.11-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-win32-x64.zip) | ||
* [JBrowse-1.16.11-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-linux-x64.zip) | ||
* [JBrowse-1.16.11-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.11-release/JBrowse-1.16.11-desktop-darwin-x64.zip) | ||
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## Minor improvements | ||
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- Add optional track label field for RegexSequenceSearch (<a href="https://github.com/gmod/jbrowse/issues/1553">issue #1553</a>, | ||
<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/Rhinogradentia">@Rhinogradentia</a>) | ||
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- Bump <a href="https://github.com/gmod">@gmod</a>/tabix for textdecoder speedup for very large tabix files | ||
(<a href="https://github.com/arpanda">@arpanda</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/gmod/jbrowse/pull/1569">issue #1569</a>) | ||
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- Increase GFF3Tabix chunkSizeLimit to avoid it being hit on relatively small | ||
files | ||
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## Bug fixes | ||
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- Bump <a href="https://github.com/gmod">@gmod</a>/cram for fix for ultra long reads (https://github.com/GMOD/cram-js/pull/84) | ||
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- Fix issue that some users were seeing with "Commit hash required" when | ||
running setup.sh. Thanks to <a href="https://github.com/GFJHogue">@GFJHogue</a> and <a href="https://github.com/hans-vg">@hans-vg</a> for reporting (<a href="https://github.com/gmod/jbrowse/issues/1555">issue #1555</a>) | ||
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- Bump <a href="https://github.com/gmod">@gmod</a>/bam which fixes some unsigned BAM tags being reported with a | ||
negative number | ||
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- Bump <a href="https://github.com/gmod">@gmod</a>/bam and <a href="https://github.com/gmod">@gmod</a>/tabix for and some fixes with reg2bins and chunk | ||
merging for large chromosomes e.g. wheat. Thanks to <a href="https://github.com/jrobinso">@jrobinso</a> for reporting | ||
(https://github.com/GMOD/tabix-js/issues/118) | ||
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