Update configuration files with the manifest information from ZeroCostDL4Mic #275

	name: Update configuration files with the manifest information from ZeroCostDL4Mic
	on:
	# At 06:00 AM of every day
	schedule:
	- cron: "0 6 * * *"
	workflow_dispatch:

	jobs:
	update_configuration:
	name: Update configuration files with the manifest information from ZeroCostDL4Mic
	runs-on: [self-hosted, dl4miceverywhere-builder]
	steps:
	- name: Clone DL4MicEverywhere repository
	uses: actions/checkout@v4
	with:
	path: DL4MicEverywhere
	- name: Clone ZeroCostDL4Mic repository
	uses: actions/checkout@v4
	with:
	repository: HenriquesLab/ZeroCostDL4Mic
	path: ZeroCostDL4Mic
	- uses: actions/setup-python@v5
	with:
	python-version: '3.9'
	cache: 'pip' # caching pip dependencies
	- name: Install requirements
	working-directory: ./DL4MicEverywhere
	run: pip install -r .tools/requirements.txt
	- name: Update all the configurations
	working-directory: ./DL4MicEverywhere
	run: python3 .tools/python_tools/update_with_zc_manifest.py
	- name: Commit the changes
	uses: stefanzweifel/git-auto-commit-action@v5
	with:
	repository: ./DL4MicEverywhere
	commit_message: GitHub Action - Update configurations with manifest from ZeroCostDL4Mic

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