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Insaflu server builds are failing #13

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jakobkolb opened this issue Mar 1, 2023 · 1 comment · Fixed by #16
Closed

Insaflu server builds are failing #13

jakobkolb opened this issue Mar 1, 2023 · 1 comment · Fixed by #16

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@jakobkolb
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When building the docker stack with docker compose build, the insaflu-server build is failing during the build tests for BioPerl with

#0 778.5 Test Summary Report
#0 778.5 -------------------
#0 778.5 t/SeqIO/Splicedseq.t                 (Wstat: 512 Tests: 1 Failed: 0)
#0 778.5   Non-zero exit status: 2
#0 778.5   Parse errors: Bad plan.  You planned 19 tests but ran 1.
#0 778.5 t/Tools/Alignment/Consed.t           (Wstat: 256 Tests: 15 Failed: 1)
#0 778.5   Failed test:  1
#0 778.5   Non-zero exit status: 1
#0 778.5 Files=334, Tests=17143, 46 wallclock secs ( 1.02 usr  0.38 sys + 41.73 cusr  3.54 csys = 46.67 CPU)
#0 778.5 Result: FAIL
#0 778.5 Failed 2/334 test programs. 1/17143 subtests failed.
#0 779.6   CJFIELDS/BioPerl-1.6.924.tar.gz
#0 779.6   ./Build test -- NOT OK
#0 779.6 //hint// to see the cpan-testers results for installing this module, try:
#0 779.6   reports CJFIELDS/BioPerl-1.6.924.tar.gz
@jakobkolb
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According to this issue this is likely due to network tests that are flaky. Apparently, these tests failures can be ignored and installation can be forced by using cpan -f -i

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