Used to parse PDFs found in: http://www.mapress.com/zootaxa/list/2011/3148.html
Simple parsing script that is used to parse phylogenies in PDF format in the website linked above. To run the parser simply:
./parse_file.py phylogenyName.txt
The output will result in a "parsed.txt" file with the phylogeny organized as follows: TaxonomicLevel TaxonmicName Order/Family/Genus/Species Number
The use of this parser was used during a BOLD project to update all phylogenies within the system.