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Fixing Restrict Corpus #65

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Fixing Restrict Corpus #65

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4 changes: 2 additions & 2 deletions R/functions.R
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Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ restrictCorpus <- function(counts,
verbose=TRUE) {

## remove genes that are present in more than X% of pixels
vi <- rowSums(as.matrix(counts) > 0) >= ncol(counts)*removeAbove
vi <- rowSums(as.matrix(counts) > 0) > ncol(counts)*removeAbove
if(verbose) {
message(paste0('Removing ', sum(vi), ' genes present in ',
removeAbove*100, '% or more of pixels...'))
Expand All @@ -45,7 +45,7 @@ restrictCorpus <- function(counts,
}

## remove genes that are present in less than X% of pixels
vi <- rowSums(as.matrix(counts) > 0) <= ncol(counts)*removeBelow
vi <- rowSums(as.matrix(counts) > 0) < ncol(counts)*removeBelow
if(verbose) {
message(paste0('Removing ', sum(vi), ' genes present in ',
removeBelow*100, '% or less of pixels...'))
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