Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

distance_roi of w60 slab 399 seems OK #19

Open
wants to merge 14 commits into
base: multisem
Choose a base branch
from
Open

distance_roi of w60 slab 399 seems OK #19

wants to merge 14 commits into from
+120 −54

Commits on Nov 14, 2024

  1. feat(roi): invert axes to match orientation of reference layout plots

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    553f336 View commit details
    Browse the repository at this point in the history

  2. feat(roi): more options to plot tissue SFOVs

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    5a5d430 View commit details
    Browse the repository at this point in the history

  3. feat(ingestion): distance_roi of w60 slab 399 at dilation=0 looks cor… 

    …rect @trautmane
    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    25afe72 View commit details
    Browse the repository at this point in the history

  4. Merge remote-tracking branch 'refs/remotes/origin/multisem'

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    08c24e8 View commit details
    Browse the repository at this point in the history

  5. feat(roi,ingestion): simulate off-by-one SFOV ID errors for tissue tr… 

    …imming; @trautmane
    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    ab0f71d View commit details
    Browse the repository at this point in the history

  6. fix(msem_to_render): off-by-one SFOV ID @trautmane

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    1568cb7 View commit details
    Browse the repository at this point in the history

  7. fix(msem_to_render): ingestion logic 

    the scan/slab/mfov/sfov was known, then lost, then retrieved from parsing the path
the info is now preserved and passed.
It will avoid the need to parse the path
    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    483a944 View commit details
    Browse the repository at this point in the history

  8. fix(msem_to_render): use known info instead of parsing path

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    0fabb9b View commit details
    Browse the repository at this point in the history

  9. Merge branch 'multisem' into multisem

    @templiert
    templiert authored Nov 14, 2024
    Configuration menu
    Copy the full SHA
    bc9ba6e View commit details
    Browse the repository at this point in the history

  10. docs(slab_info): SlabInfo instead of slab

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    37a80e2 View commit details
    Browse the repository at this point in the history

  11. Merge remote-tracking branch 'refs/remotes/origin/multisem'

    @templiert
    templiert committed Nov 14, 2024
    Configuration menu
    Copy the full SHA
    15dfb33 View commit details
    Browse the repository at this point in the history

Commits on Nov 15, 2024

  1. feat(msem_to_render,assembly): SFOV width/height is wafer-invariant; … 

    …read from xlog
    @templiert
    templiert committed Nov 15, 2024
    Configuration menu
    Copy the full SHA
    4ef285b View commit details
    Browse the repository at this point in the history

  2. fix(msem_to_render): pad scan with 3 zeros

    @templiert
    templiert committed Nov 15, 2024
    Configuration menu
    Copy the full SHA
    cb50160 View commit details
    Browse the repository at this point in the history

  3. perf(msem_to_render): np.min instead of min in loop

    @templiert
    templiert committed Nov 15, 2024
    Configuration menu
    Copy the full SHA
    72faaa2 View commit details
    Browse the repository at this point in the history