Customize reach out with a question button link

src/components/projects/individual-project/QuickLinks.astro

@@ -78,10 +78,10 @@ try {
         )
       }
       {
-        frontmatter["maintainer"] && (
+        frontmatter["preferred contact method"] && (
           <a
             class="self-start btn rounded-md p-2 font-normal"
-            href={frontmatter["maintainer contact info"]}
+            href={frontmatter["preferred contact method"]}
           >
             Reach out with a question
           </a>

src/content/config.ts

@@ -7,7 +7,7 @@ const projectsCollection = defineCollection({
     title: z.string(),
     tagline: z.string(),
     maintainer: z.string(),
-    "maintainer contact info": z.string(),
+    "preferred contact method": z.string(),
     "project type": z.array(z.string()),
     "OSSI proposal link": z.string().optional(),
     "github link": z.string(),

src/content/projects/_project-template.md

@@ -1,15 +1,15 @@
 ---
 title: Required. Your project title.
 tagline: "Required. 1-2 sentences that describe your project. An aside: if you use a colon in a field value, you must wrap the entire phrase in quotes. Otherwise, quotes are not required."
-maintainer: Name of the person responsible for maintaining this project page.
-maintainer contact info: Either a URL (e.g., GitHub repo issues link) or email in the format of mailto:[email protected]
+maintainer: Required. Name of the person responsible for maintaining this project page. For internal use/reference - not posted to the website.
+preferred contact method: Required. Preferred way for users to reach out for help (e.g., a link to the GitHub repo's issues, Image.sc forum, or email in the format of mailto:[email protected])
 #project type - Required. Pick one of the three options - delete the other two.
 project type: [OSSI - current, OSSI - alumni, Other]
 OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal.
 github link: Required. Link to GitHub repository
 documentation link: Required. Link to documentation - can be the same as the GitHub repo if the README is the documentation
 installation instructions link: Required. Link to installation instructions - can be the same as the GitHub repo
-how to cite text: "The citation for your software - wrap in quotes to ensure colons are interpreted correctly. If your software doesn't have an associated published paper or DOI, delete or comment-out this field to use your GitHub repo as the default."
+how to cite text: "If your software doesn't have an associated published paper or DOI, delete or comment-out this field to use your GitHub repo as the default. Otherwise, provide the citation for your software - wrap in quotes to ensure colons are interpreted correctly. "
 how to cite link: "https://doi.org/example - wrap entire link in quotes. If a DOI is not available, then delete or comment-out this field to use your GitHub repo as the default."
 additional links array:
   [

src/content/projects/an-open-source-platform-for-single-molecule-localization.md

@@ -2,7 +2,7 @@
 title: An open-source platform for single-molecule localization
 tagline: Develop a user-friendly (napari) deep learning-based single-molecule detection software.
 maintainer: Srini Turaga
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/single_molecule_localization.pdf
 github link: https://github.com/TuragaLab/DECODE

src/content/projects/bigstitcher.md

@@ -2,7 +2,7 @@
 title: BigStitcher
 tagline: A software package that allows simple and efficient alignment of multi-tile and multi-angle image datasets, for example acquired by lightsheet, widefield or confocal microscopes.
 maintainer: Stephan Preibisch
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/petascale_lightsheet.pdf
 github link: https://github.com/preibischlab/bigstitcher/

src/content/projects/bigstream.md

@@ -2,7 +2,7 @@
 title: BigStream
 tagline: Flexible and powerful image registration tools for small and big data (TB+) alike. Stitching, subject-to-atlas, multi-modal, in vivo to ex vivo, and motion correction. 100% Python, can be run from Jupyter notebooks, including full access to workstation or adaptable distributed resources.
 maintainer: Greg M. Fleishman
-maintainer contact info: [email protected]
+preferred contact method: [email protected]
 project type: [Other]
 OSSI proposal link: ""
 github link: https://github.com/JaneliaSciComp/bigstream

src/content/projects/bigwarp.md

@@ -2,7 +2,7 @@
 title: BigWarp
 tagline: Maintain and extend BigWarp (3D non-rigid registration for very large volumes).
 maintainer: John Bogovic
-maintainer contact info: mailto:[email protected]
+preferred contact method: https://forum.image.sc/tag/bigwarp
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/bigwarp.pdf
 github link: https://github.com/saalfeldlab/bigwarp
@@ -38,12 +38,6 @@ use case:
     Expansion microscopy (ExM),
   ]
 usage environment: [Local installation]
-software ecosystem:
-  [
-    BigDataViewer,
-    Fiji,
-    ImgLib2,
-    Java Virtual Machine,
-  ]
+software ecosystem: [BigDataViewer, Fiji, ImgLib2, Java Virtual Machine]
 supported file types: [HDF5, N5, TIFF, OME-Zarr, Zeiss CZI]
 ---

src/content/projects/cellpose.md

@@ -1,18 +1,17 @@
 ---
 title: Cellpose
 tagline: A generalist algorithm for cell and nucleus segmentation (v1.0) that can be optimized for your own data (v2.0) and perform image restoration (v3.0).
-maintainer: Carsen Stinger
-maintainer contact info: mailto:[email protected]
+maintainer: Carsen Stringer
+preferred contact method: https://forum.image.sc/tag/cellpose
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/suite2p_and_cellpose.pdf
 github link: https://github.com/MouseLand/cellpose
 documentation link: https://cellpose.readthedocs.io/en/latest/
 installation instructions link: https://github.com/MouseLand/cellpose?tab=readme-ov-file#installation
 how to cite link: https://doi.org/10.1038/s41592-020-01018-x
 how to cite text: "Stringer, C., Wang, T., Michaelos, M., & Pachitariu, M. (2021). Cellpose: a generalist algorithm for cellular segmentation. Nature methods, 18(1), 100-106."
-additional links array: [https://forum.image.sc/tag/cellpose]
-additional links text array:
-  ["For additional support, visit the image.sc forum"]
+# additional links array: []
+# additional links text array: []
 # related blog posts: [Only-for-blog-posts-hosted-on-this-site, Optional-file-name]
 # image file: ./optional-file-path.jpg
 # image alt text: Alt text is required if you upload an image file

src/content/projects/easi-fish-pipeline.md

@@ -2,7 +2,7 @@
 title: EASI-FISH Pipeline
 tagline: Automated analysis pipeline for EASI-FISH spatial transcriptomics data
 maintainer: Cristian Goina
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/easifish_pipeline.pdf
 github link: https://github.com/JaneliaSciComp/multifish

src/content/projects/entrypoints.md

@@ -2,7 +2,7 @@
 title: Entrypoints
 tagline: Support multiple entrypoint scripts in a container for use in containerized scientific tools.
 maintainer: Rokicki
-maintainer contact info: https://github.com/JaneliaSciComp/entrypoints/issues
+preferred contact method: https://github.com/JaneliaSciComp/entrypoints/issues
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/entrypoints
 documentation link: https://github.com/JaneliaSciComp/entrypoints

src/content/projects/hortacloud.md

@@ -2,7 +2,7 @@
 title: HortaCloud
 tagline: Large volume volumetric rendering and collaborative neuron annotation in the cloud
 maintainer: Rokicki et al.
-maintainer contact info: https://github.com/JaneliaSciComp/hortacloud/issues
+preferred contact method: https://github.com/JaneliaSciComp/hortacloud/issues
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/hortacloud.pdf
 github link: https://github.com/JaneliaSciComp/hortacloud

src/content/projects/java-packaging-tool-chain.md

@@ -2,7 +2,7 @@
 title: Java packaging tool chain
 tagline: Develop an easy-to-use packaging system for Java applications.
 maintainer: Caleb Hulbert
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/jvm_tool_deployment.pdf
 github link: "#"

src/content/projects/kilosort.md

@@ -2,7 +2,7 @@
 title: Kilosort
 tagline: Maintain and develop python version of Kilosort (electrophysiology data).
 maintainer: Carsen Stringer
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/kilosort.pdf
 github link: https://github.com/MouseLand/Kilosort

src/content/projects/maru.md

@@ -2,7 +2,7 @@
 title: Maru
 tagline: Maru is an opinionated command-line interface for quickly and easily containerizing scientific applications.
 maintainer: Rokicki
-maintainer contact info: https://github.com/JaneliaSciComp/maru/issues
+preferred contact method: https://github.com/JaneliaSciComp/maru/issues
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/maru
 documentation link: https://github.com/JaneliaSciComp/maru

src/content/projects/neuronbridge.md

@@ -2,7 +2,7 @@
 title: NeuronBridge
 tagline: A web application for easily and rapidly finding putative morphological matches between large data sets of neurons imaged using different modalities, namely electron microscopy (EM) and light microscopy (LM). Matches have been precomputed for all of Janelia's public EM/LM data sets, and are quick to look up by identifier. You can also upload your own data and match it against these public data sets.
 maintainer: NeuronBridge Team
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/neuronbridge
 documentation link: https://neuronbridge.janelia.org/help
@@ -19,11 +19,7 @@ programming language: [Javascript, Python, Java]
 open source license: [BSD-3 Clause]
 software type: [Service, Web application, Website]
 supported file types: [H5J, SWC]
-use case:
-  [
-    Confocal light microscopy (LM),
-    Electron microscopy (EM),
-  ]
+use case: [Confocal light microscopy (LM), Electron microscopy (EM)]
 usage environment: [Cloud, Web browser]
 software ecosystem: []
 ---

src/content/projects/neuvid.md

@@ -2,56 +2,28 @@
 title: neuVid
 tagline: Generates biology videos from high-level descriptions using Blender or VVD Viewer.
 maintainer: Philip Hubbard
-maintainer contact info:  mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/neuvid.pdf
 github link: https://github.com/connectome-neuprint/neuVid
 documentation link: https://github.com/connectome-neuprint/neuVid/tree/master/documentation
 installation instructions link: https://github.com/connectome-neuprint/neuVid?tab=readme-ov-file#usage-with-neuprint
 how to cite text: "Philip M. Hubbard, The newVid video generation system, https://zenodo.org/records/10805089"
 how to cite link: "https://zenodo.org/records/10805089"
-additional links array:
-  [
-    https://www.vizbi.org/Posters/2024/vB01
-  ]
-additional links text array:
-  [
-    VIZBI (Visualizing Biological Data) 2024 poster
-  ]
-related blog posts:
-  []
+additional links array: [https://www.vizbi.org/Posters/2024/vB01]
+additional links text array: [VIZBI (Visualizing Biological Data) 2024 poster]
+related blog posts: []
 image file: ./neuVid.png
 image caption: "Example neuVid output using Blender: A sample of neurons from the Drosophila optic lobe"
 youtube url: https://www.youtube.com/watch?v=-9_arTj_9lc
 youtube caption: A sample of neurons from the Drosophila optic lobe.
-development team:
-  [
-    FlyEM,
-    Scientific Computing Software,
-  ]
-programming language:
-  [
-    Python,
-  ]
+development team: [FlyEM, Scientific Computing Software]
+programming language: [Python]
 open source license: [CC-by-0]
-software type:
-  [
-    Command line application,
-    Native application,
-  ]
+software type: [Command line application, Native application]
 use case:
-  [
-    Confocal light microscopy (LM),
-    Electron microscopy (EM),
-    Visualization,
-  ]
-usage environment:
-  [
-    Local installation,
-  ]
-software ecosystem:
-  [
-    Blender,
-  ]
+  [Confocal light microscopy (LM), Electron microscopy (EM), Visualization]
+usage environment: [Local installation]
+software ecosystem: [Blender]
 supported file types: [H5J, OBJ, SWC]
 ---

src/content/projects/ossi-website.md

@@ -2,7 +2,7 @@
 title: OSSI Website
 tagline: A portfolio for projects supported by Open Science Software Initiative, and other software projects at Janelia
 maintainer: Allison Truhlar
-maintainer contact info: https://github.com/JaneliaSciComp/ossi-website/issues
+preferred contact method: https://github.com/JaneliaSciComp/ossi-website/issues
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/ossi_website.pdf
 github link: https://github.com/JaneliaSciComp/ossi-website

src/content/projects/paintera.md

@@ -2,7 +2,7 @@
 title: Paintera
 tagline: Maintain and extend Paintera (3D annotation software for very large volumes).
 maintainer: Caleb Hulbert
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/paintera.pdf
 github link: https://github.com/saalfeldlab/paintera

src/content/projects/rs-fish.md

@@ -2,7 +2,7 @@
 title: RS-FISH
 tagline: Precise, interactive, fast, and scalable FISH spot detection
 maintainer: Preibisch et al.
-maintainer contact info: https://github.com/PreibischLab/RS-FISH/issues
+preferred contact method: https://github.com/PreibischLab/RS-FISH/issues
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/spatial_transcriptomics_tools.pdf
 github link: https://github.com/PreibischLab/RS-FISH

src/content/projects/stim.md

@@ -2,7 +2,7 @@
 title: Spatial Transcriptomics as Images Project (STIM)
 tagline: A framework for storing, (interactively) viewing, aligning, and processing spatial transcriptomics data.
 maintainer: Preibisch et al.
-maintainer contact info: https://github.com/PreibischLab/STIM/issues
+preferred contact method: https://github.com/PreibischLab/STIM/issues
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/spatial_transcriptomics_tools.pdf
 github link: https://github.com/PreibischLab/STIM

src/content/projects/stitching-spark.md

@@ -2,7 +2,7 @@
 title: Stitching-Spark
 tagline: Reconstructing large microscopy images from overlapping image tiles on a high-performance Spark cluster.
 maintainer: John Bogovic
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/petascale_lightsheet.pdf
 github link: https://github.com/saalfeldlab/stitching-spark

src/content/projects/suite2p.md

@@ -1,8 +1,8 @@
 ---
 title: Suite2p
 tagline: Pipeline for processing two-photon calcium imaging data.
-maintainer: Carsen String
-maintainer contact info: mailto:[email protected]
+maintainer: Carsen Stringer
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/suite2p_and_cellpose.pdf
 github link: https://github.com/MouseLand/suite2p

src/content/projects/video-annotation-library.md

@@ -2,7 +2,7 @@
 title: Video Annotation Library
 tagline: A usable and extensible video annotation library for machine learning
 maintainer: Xi Peng, Kristin Branson
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/video_annotation_library.pdf
 github link: https://github.com/JaneliaSciComp/videoAnnotation

src/content/projects/vvd-viewer.md

@@ -2,7 +2,7 @@
 title: VVDViewer
 tagline: Interactive 3D viewer/renderer for very large image volumes
 maintainer: Takashi Kawase
-maintainer contact info: mailto:[email protected]
+preferred contact method: mailto:[email protected]
 project type: [OSSI - current]
 OSSI proposal link: ../../proposals/vvdviewer.pdf
 github link: https://github.com/JaneliaSciComp/VVDViewer