Merge pull request #40 from Kalan-Lab/raufs-patch-1

Update fai.py
Kalan-Lab · Aug 23, 2023 · 7c835db · 7c835db
2 parents 6e680c3 + 3b45c1f
commit 7c835db
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/zol/fai.py b/zol/fai.py
@@ -1487,8 +1487,8 @@ def plotTreeHeatmap(homologous_gbk_dir, hmm_work_dir, species_tree, plot_phylo_d
 				all_samples_in_tree.add(node.name)
 
 		if len(all_samples_in_tree.intersection(set(sample_final_lts.keys()))) == 0:
-			logObject.warning('Unable to generate phylogenetic-heatmap because species tree provided doesn't match target genomes searched against.')
-			sys.stderr.write('Warning: Unable to generate phylogenetic-heatmap because species tree provided doesn't match target genomes searched against.\n')
+			logObject.warning('Unable to generate phylogenetic-heatmap because species tree provided doesn\'t match target genomes searched against.')
+			sys.stderr.write('Warning: Unable to generate phylogenetic-heatmap because species tree provided doesn\'t match target genomes searched against.\n')
 			return
 
 		gbk_info_dir = hmm_work_dir + 'GeneCluster_Info/'