Skip to content

v1.5.0
Compare
Choose a tag to compare
@raufs raufs released this 25 Oct 18:51
· 25 commits to main since this release
v1.5.0
75283d1
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Major updates:

  • Introduce cgcg for interactive network visualization of homologous instances of gene clusters.
  • Introduce domain-mode in zol. Uses pyhmmer to identify Pfam domains in CDS features in gene clusters to chop the CDS features up by domains and perform domain-centric analyses instead of protein-centric analyses. Identifies domain-ortholog groups (DOGs 🐶 ) Useful for dealing with gene clusters featuring ginormous genes, such as PKSs or NPRSs.
  • Introduce zol-scape a simple wrapper of BiG-SCAPE to run zol on each GCF it identified to complement visual views produced by CORASON.
  • Upgrade project organization by addition of pyproject.toml , adjust setup.py, and get rid of Rscript references. Rscripts are now created de novo within result directories allowing users to customize them as needed.

Minor updates:

  • correct extraction of phage instances which are annotated as entire contigs/scaffolds by geNomad in atpoc.
  • minimal-mode in the database downloading script now includes Pfam HMMs in addition to PGAP HMMs.

What's Changed

Full Changelog: v1.4.12...v1.5.0

Contributors

raufs
Assets 2
Loading