Skip to content

Issues: Knowledge-Graph-Hub/kg-microbe

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

88 Open 39 Closed
88 Open 39 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

model trait theme categories
#272 opened Dec 22, 2024 by realmarcin
collapse RHEA and EC when mapped
#271 opened Dec 4, 2024 by realmarcin
review bacdive isolation sources, some could be tags
#270 opened Dec 4, 2024 by realmarcin
transfer obsolete EC nodes to replacement
#268 opened Nov 22, 2024 by realmarcin
EC ontology transform truncates .- in ECs
#267 opened Nov 21, 2024 by realmarcin
nodes with spaces in ids
#265 opened Nov 7, 2024 by realmarcin
assay: nodes with spaces in id
#264 opened Nov 7, 2024 by realmarcin
cell_shape: has three categories
#262 opened Nov 4, 2024 by realmarcin
strains and data from JMC
#261 opened Nov 1, 2024 by realmarcin
biolog data
#260 opened Oct 17, 2024 by realmarcin
Jenkins build fails due to old python version
#256 opened Sep 26, 2024 by hrshdhgd
7
core vs merge repo node and edge header vs column content differences
#255 opened Sep 26, 2024 by realmarcin
ROBOT default memory 64G not enough?
#254 opened Sep 26, 2024 by realmarcin
potential duplicate assay nodes
#253 opened Sep 26, 2024 by realmarcin
A few BactoTraits columns that are missing
#252 opened Sep 19, 2024 by realmarcin
2
exclude duplicate UniProt proteomes and relax protein count filter
#251 opened Sep 18, 2024 by realmarcin
1
assign ENVO for bacdive isolation_sources
#248 opened Sep 17, 2024 by realmarcin
NCBITaxon to CHEBI via location_of -- weird location and also predicate upgrade
#246 opened Sep 16, 2024 by realmarcin
2
revisit taxonomy trimming, check top level roots
#239 opened Aug 31, 2024 by realmarcin
two subclass edges for strain
#235 opened Aug 29, 2024 by realmarcin
2
~90 mediadive edges have empty subjects
#231 opened Aug 24, 2024 by realmarcin
disbiome transform happens without specifying in transform.py transforms list
#218 opened Aug 21, 2024 by realmarcin
upa_nodes.tsv: All rows should have 14 columns
#204 opened Aug 4, 2024 by hrshdhgd
@bsantan
2
ec_nodes.tsv columns are scrambled
#203 opened Aug 4, 2024 by hrshdhgd
@bsantan
reconcile oaklib .cache db files VS downloaded ontologies
#202 opened Aug 2, 2024 by realmarcin
2
ProTip! Adding no:label will show everything without a label.