kg-phenio

A graph for accessing and comparing knowledge concerning phenotypes across species and genetic backgrounds.

Also great for ontology-based graph machine learning experiments.

Please see the repo project for an overview.

See also OntoML and Phenio.

Setup

Clone the repository, then install with poetry install.

Operation

Download sources:

python run.py download

Transform sources:

python run.py transform

Build the merged graph:

python run.py merge

Prepare embeddings and classifiers with NEAT. These are defined in neat.yaml.

Or, if running locally, try using neat_local.yaml.