remove deprecated DataFrame usage

Closes #165
LCSB-BioCore · Mar 19, 2021 · ea188f0 · ea188f0
1 parent d6ed20b
commit ea188f0
Show file tree

Hide file tree

Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/src/io/process.jl b/src/io/process.jl
@@ -62,7 +62,7 @@ function getMetaData(meta::Dict{String,String})::DataFrame
     # create a data frame for the results
     df = Matrix{String}(undef, pars, length(channel_properties))
     df .= defaultValue
-    df = DataFrame(df)
+    df = DataFrame(df, :auto)
     rename!(df, Symbol.(channel_properties))
 
     # collect the data from params

diff --git a/test/testBatch.jl b/test/testBatch.jl
@@ -26,9 +26,9 @@
         codes = som.codes
         @test size(codes) == (100, 10)
 
-        dfCodes = DataFrame(codes)
+        dfCodes = DataFrame(codes, :auto)
         rename!(dfCodes, Symbol.(antigens))
-        dfEmbed = DataFrame(embed)
+        dfEmbed = DataFrame(embed, :auto)
         CSV.write(genDataPath * "/batchDfCodes.csv", dfCodes)
         CSV.write(genDataPath * "/batchWinners.csv", winners)
         CSV.write(genDataPath * "/batchEmbedded.csv", dfEmbed)

diff --git a/test/testParallel.jl b/test/testParallel.jl
@@ -23,9 +23,9 @@
         codes = som.codes
         @test size(codes) == (100, 10)
 
-        dfCodes = DataFrame(codes)
+        dfCodes = DataFrame(codes, :auto)
         rename!(dfCodes, Symbol.(antigens))
-        dfEmbed = DataFrame(embed)
+        dfEmbed = DataFrame(embed, :auto)
         CSV.write(genDataPath * "/parallelDfCodes.csv", dfCodes)
         CSV.write(genDataPath * "/parallelWinners.csv", winners)
         CSV.write(genDataPath * "/parallelEmbedded.csv", dfEmbed)