- Rehan Akbani (owner)
- John Weinstein
- Bradley Broom
- Tod Casasent (developer)
MetaBatch Analyzer is an HTTP GUI interface to a MetaBatch Analyzer (MBA) Docker Compose Stack. MBA includes images for a GUI component, an MBatch processing component, a Viewer and analysis component, and a component for downloading and converting GDC data for use with MBA.
Download the docker-compose.yml file at the root of this repository. This file is setup for use on Linux.
Make the following directories.
- /MBA/OUTPUT
- /MBA/PROPS
- /MBA/UTIL
- /MBA/WEBSITE
- /MBA/MW_CACHE
- /MBA/MW_ZIP
- Copy the contents of inst/ext/MW_CACHE into /MBA/MW_CACHE.
- Copy the contents of inst/ext/OUTPUT into /MBA/OUTPUT.
- Copy the contents of inst/ext/PROPS into /MBA/PROPS.
- Copy the contents of inst/ext/UTIL into /MBA/UTIL.
- Copy the contents of inst/ext/WEBSITE into /MBA/WEBSITE.
Permissions or ownership of the directories may need to be changed or matched to the Docker image user 2004.
In the directory with the docker-compose.yml file run:
docker compose -p mbahub -f docker-compose.yml up --no-build -d
You can stop it with:
docker compose -p mbahub -f docker-compose.yml down
To connect to the MBatch Omic Browser with:
localhost:8080/MBA/MBA
For educational and research purposes only.
Funding This work was supported in part by U.S. National Cancer Institute (NCI) grant: Weinstein, Broom, Akbani. Computational Tools for Analysis and Visualization of Quality Control Issues in Metabolomic Data, U01CA235510