move KEGG database to KEGG-Pathways module

MGX-metagenomics · Oct 20, 2023 · dee6d03 · dee6d03
1 parent 101b3b9
commit dee6d03
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Showing 4 changed files with 3 additions and 70 deletions.
diff --git a/MGX-KeggViewer/src/main/java/de/cebitec/mgx/gui/keggviewer/Installer.java b/MGX-KeggViewer/src/main/java/de/cebitec/mgx/gui/keggviewer/Installer.java
diff --git a/MGX-KeggViewer/src/main/java/de/cebitec/mgx/gui/keggviewer/KeggViewer.java b/MGX-KeggViewer/src/main/java/de/cebitec/mgx/gui/keggviewer/KeggViewer.java
@@ -55,6 +55,7 @@ public class KeggViewer extends CategoricalViewerI<Long> implements Customizable
     private KeggCustomizer customizer;
     private List<Pair<GroupI, DistributionI<Long>>> data;
     private VGroupManagerI vmgr = null;
+    private boolean initOk = true;
     //
     private static boolean messageShown = false;
 
@@ -67,6 +68,7 @@ public KeggViewer() {
             customizer = new KeggCustomizer();
         } catch (KEGGException ex) {
             Exceptions.printStackTrace(ex);
+            initOk = false;
         }
     }
 
@@ -242,7 +244,7 @@ protected void done() {
 
     @Override
     public boolean canHandle(AttributeTypeI valueType) {
-        return Installer.keggLoaded && super.canHandle(valueType) && valueType.getName().equals("EC_number");
+        return initOk && super.canHandle(valueType) && valueType.getName().equals("EC_number");
     }
 
     @Override

diff --git a/MGX-KeggViewer/src/main/nbm/manifest.mf b/MGX-KeggViewer/src/main/nbm/manifest.mf
@@ -1,3 +1,2 @@
 Manifest-Version: 1.0
-OpenIDE-Module-Install: de/cebitec/mgx/gui/keggviewer/Installer.class
 OpenIDE-Module-Localizing-Bundle: de/cebitec/mgx/gui/keggviewer/Bundle.properties
diff --git a/MGX-KeggViewer/src/main/resources/de/cebitec/mgx/gui/keggviewer/kegg.db b/MGX-KeggViewer/src/main/resources/de/cebitec/mgx/gui/keggviewer/kegg.db