Uppsala University, Department of Medical Sciences, Molecular Precision Medicine
Molecular Precision Medicine research group and the SNP&SEQ Technology Platform
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Stand-alone scripts deployed to Irma
Python
7
Repositories
Showing 10 of 62 repositories
ALLCoP
Public
Conformal prediction for acute lymphoblastic leukemia (ALL) RNA-seq classifiers
Molmed/ALLCoP’s past year of commit activity
Python
0
MIT
0
0
0
Updated Nov 18, 2024
allium_prepro
Public
Tools to preprocess gene expression and DNA methylation data for prediction using the ALLIUM classifier.
Molmed/allium_prepro’s past year of commit activity
Python
0
MIT
0
0
0
Updated Nov 18, 2024
conformist
Public
A conformal prediction framework implementing conformal risk control.
Molmed/conformist’s past year of commit activity
Python
2
MIT
0
1
0
Updated Nov 14, 2024
Molmed/Equine_Asthma_Cell_Atlas’s past year of commit activity
R
0
0
0
0
Updated Nov 12, 2024
Molmed/sis_style_checksums_nextflow’s past year of commit activity
Nextflow
0
MIT
2
0
0
Updated Oct 30, 2024
allium
Public
ALLIUM modifications for the ALLoy project (a private fork of Krali_2023)
Molmed/allium’s past year of commit activity
R
0
MIT
0
0
0
Updated Oct 16, 2024
Molmed/Krali_2023’s past year of commit activity
Jupyter Notebook
0
0
0
0
Updated Oct 11, 2024
gene-thesaurus
Public
Translates from older gene name aliases to the current HGNC standard gene name
Molmed/gene-thesaurus’s past year of commit activity
Python
1
MIT
0
0
0
Updated Oct 9, 2024
seqreports
Public
This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.
Molmed/seqreports’s past year of commit activity
Python
1
10
0
0
Updated Sep 30, 2024
SDashboard
Public archive
A visualization app written in Shiny to show sequencing metrics
Molmed/SDashboard’s past year of commit activity
R
0
MIT
5
0
0
Updated Sep 25, 2024
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